User: sarah.kettelkamp

Reputation:
0
Status:
New User
Last seen:
2 months, 2 weeks ago
Joined:
2 months, 2 weeks ago
Email:
s***************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by sarah.kettelkamp

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answer
230
views
1
answers
Comment: C: Issues with Marking Duplicates in Picard
... So while I was waiting for your response, I tried doing samtools sort -@ 4 -m 30G S1_merged.bam S1_sorted.bam And it worked and only gave me one file! But then I tried doing the MarkDuplicates and it still did the same thing as before. I must be doing something wrong at this step. ...
written 11 weeks ago by sarah.kettelkamp0
0
votes
1
answer
230
views
1
answers
Comment: C: Issues with Marking Duplicates in Picard
... I tried doing samtools sort -o S1_sorted.bam S1_merged.bam and it told me "fail to open file S1_sorted.bam" ...
written 11 weeks ago by sarah.kettelkamp0
0
votes
1
answer
230
views
1
answers
Comment: C: Issues with Marking Duplicates in Picard
... Oh dang, okay. Let me trying doing the sort the way you listed. Hopefully that helps. Thanks! ...
written 11 weeks ago by sarah.kettelkamp0
0
votes
1
answer
230
views
1
answers
Comment: C: Issues with Marking Duplicates in Picard
... ![I linked a screenshot of my terminal showing what it gives me][1] https://imgur.com/pUmF8lh ...
written 11 weeks ago by sarah.kettelkamp0
3
votes
1
answer
230
views
1
answer
Issues with Marking Duplicates in Picard
... Hi everyone! So I have been tasked with analyzing some sequence data even though I have no clue what I'm doing. I was given some data from 11 samples (S1, S2, etc.), each with a singles file as well as a forward read file (R1) and a reverse read file (R2). In addition, each sample was run in two di ...
gatk picard samtools sorting bwa written 11 weeks ago by sarah.kettelkamp0 • updated 11 weeks ago by goodez460

Latest awards to sarah.kettelkamp

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 753 users visited in the last hour