User: aswanikrishnap1994

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Posts by aswanikrishnap1994

<prev • 18 results • page 1 of 2 • next >
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Comment: C: allen brain atlas data extraction
... No, but I am able to download each sample wise data. I don't know if they are having averaged expression data available. That will be really helpful. ...
written 5 months ago by aswanikrishnap199410
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allen brain atlas data extraction
... I want to extract allen brain atlas data for my current work. is there any way to download the whole expression data from the atlas for the adult human brain? ...
allen brain atlas data_extraction brain_data written 5 months ago by aswanikrishnap199410 • updated 3 months ago by Biostar ♦♦ 20
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Comment: C: creating box plot from DESeq2 result
... I have DEseq2 results with log2FC and the standard error and i can plot graph using that. I just wanted to know if something else will work or not and what all are the ways to explore the data? ...
written 7 months ago by aswanikrishnap199410
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Comment: C: creating box plot from DESeq2 result
... Thank you for your suggestion. I was just trying understand how i can visualize and interpret the results and i am completely new to this kind of analysis. ...
written 7 months ago by aswanikrishnap199410
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Comment: C: creating box plot from DESeq2 result
... yes i tried. I am dealing with cancer datasets and couldn't find anything useful which i can use for deseq2 data. ...
written 7 months ago by aswanikrishnap199410
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creating box plot from DESeq2 result
... I have result file obtained from deseq2 which has log2FC values. can anyone please tell me hoe to plot a boxplot for a gene of interest (control vs treated) from this data? ...
tcga data analysis deseq2 rna-seq written 7 months ago by aswanikrishnap199410
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Comment: C: How to download a full matrix of gene expression of a TCGA dataset
... There is a download link .once you select your interested cancer dataset and choose the study(for eg:htseq count). There u find download link on the top. ...
written 7 months ago by aswanikrishnap199410
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Comment: C: TCGA data analysis: DEG analysis
... Thank you so much for the reply,Then i should use the log2 expression values for comparison across the cancer datasets ...
written 8 months ago by aswanikrishnap199410
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TCGA data analysis: DEG analysis
... i am currently working with TCGA dataset from UCSC xena browser. I have completed the differential gene expression analysis using Deseq2 from genepattern for one cancer dataset. I have some doubts regarding the result and want to know how to proceed further for analyzing across different cancer sam ...
deg analysis tcga rna-seq written 8 months ago by aswanikrishnap199410 • updated 8 months ago by ATpoint36k
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Comment: C: TCGA data analysis
... thank you so much kevin ...
written 11 months ago by aswanikrishnap199410

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