User: aswanikrishnap1994

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Posts by aswanikrishnap1994

<prev • 12 results • page 1 of 2 • next >
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Comment: C: How to download a full matrix of gene expression of a TCGA dataset
... There is a download link .once you select your interested cancer dataset and choose the study(for eg:htseq count). There u find download link on the top. ...
written 8 hours ago by aswanikrishnap199410
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Comment: C: TCGA data analysis: DEG analysis
... Thank you so much for the reply,Then i should use the log2 expression values for comparison across the cancer datasets ...
written 29 days ago by aswanikrishnap199410
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TCGA data analysis: DEG analysis
... i am currently working with TCGA dataset from UCSC xena browser. I have completed the differential gene expression analysis using Deseq2 from genepattern for one cancer dataset. I have some doubts regarding the result and want to know how to proceed further for analyzing across different cancer sam ...
deg analysis tcga rna-seq written 5 weeks ago by aswanikrishnap199410 • updated 5 weeks ago by ATpoint26k
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Comment: C: TCGA data analysis
... thank you so much kevin ...
written 4 months ago by aswanikrishnap199410
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Comment: C: TCGA data analysis
... since i am a beginner and our lab is doing this for the first time, we are not sure about the workflow. ...
written 4 months ago by aswanikrishnap199410
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Comment: C: TCGA data analysis
... hi Kevin I took HTSeq-count data for my analysis. For DEG analysis how should i proceed with this data?? ...
written 4 months ago by aswanikrishnap199410
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Comment: A: TCGA data analysis
... Thank you Kevin for the suggestion. But i guess TCGA data is not open access now, so i won't be able to download the dataset. For that i am currently using UCSC XENA. ...
written 4 months ago by aswanikrishnap199410
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TCGA data analysis
... hi, i have a set of genes involved in particular function and want to compare across all the cancer samples in TCGA in order to find some correlation. I am completely new to this and have no idea how to proceed further with TCGA data ...
gene list tcga cancer rna-seq coexpression written 4 months ago by aswanikrishnap199410
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Comment: C: proteome data analysis
... biologically these are significant proteins which are unique to one particular sample ...
written 5 months ago by aswanikrishnap199410
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proteome data analysis
... **i have 2 samples A & B proteome data analyzed using progenesis software. i have max fold change reported to be infinity. How will i convert these fold change to log2fc values for heat map generation? ...
proteomics data analysis written 5 months ago by aswanikrishnap199410

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