User: doramora
doramora • 0
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Posts by doramora
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C: centos and bowtie2
... sorry, but after downloading it still can't work in both of this ways:
> sudo yum install bowtie2
>sudo yum install bowtie2-2.3.5-linux-x86_64
maybe i can't understand the right way of writing path on centos
thank you ...
written 2 days ago by
doramora • 0
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... Hi! Have you ever used Centos 7?(or other versions of Centos)
I wanted to install bowtie2 on it but it writes an error every time i use "sudo yum install bowtie2"
it writes, that it can't find bowtie2, but i've already got tbb-devel.x86_64
please, help, if you have ever worked with Centos, after Ubu ...
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C: samtools view manual
... It is clear! Thank you a lot! My mind feels better) ...
written 7 days ago by
doramora • 0
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C: samtools view manual
... thank you for the website! i have found, that i've got 4 Flag, but i still can't understand, where do i need to use -f ...
written 7 days ago by
doramora • 0
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... Hi! Could you please explain me the differense between -f and -F in samtools view while filtering bam file? ...
written 7 days ago by
doramora • 0
• updated
7 days ago by
Morris_Chair • 50
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... What will write Illumina if my quality will be @@@@? How will it react? Or it'll be possible only if i'll have a null string? ...
written 25 days ago by
doramora • 0
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C: bowtie2 tools and reads targeting
... ok, thank you! and when it'll save my reads as .sam i should simply use samtools in terminal, or BBMap has some othee tools to save it in fastqc? ...
written 10 weeks ago by
doramora • 0
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... Hi! I need to target some reads on my sequence and then i need to pick up reads from there as fastq. has bowtie2 such tools, or i need some other programms to do? ...
written 10 weeks ago by
doramora • 0
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C: How to align reads on reference?
... ok
now i'm on the one of the first steps of learning bioinformatics, and my teacher gave me so called 'exercises', to understand, how it works.
i've made a 'program' in Linux Terminal with help of bowtie2-build, bowtie2, samtools and bedtools
it was like smth of this kind:
bowtie2-build /path t ...
written 3 months ago by
doramora • 0
• updated
3 months ago by
WouterDeCoster ♦ 37k
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