User: doramora

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doramora0
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Posts by doramora

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Comment: C: centos and bowtie2
... ok. my fault. thank you ...
written 2 days ago by doramora0
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Comment: C: centos and bowtie2
... sorry, but after downloading it still can't work in both of this ways: > sudo yum install bowtie2 >sudo yum install bowtie2-2.3.5-linux-x86_64 maybe i can't understand the right way of writing path on centos thank you ...
written 2 days ago by doramora0
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centos and bowtie2
... Hi! Have you ever used Centos 7?(or other versions of Centos) I wanted to install bowtie2 on it but it writes an error every time i use "sudo yum install bowtie2" it writes, that it can't find bowtie2, but i've already got tbb-devel.x86_64 please, help, if you have ever worked with Centos, after Ubu ...
sequencing written 4 days ago by doramora0 • updated 4 days ago by 5heikki8.3k
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Comment: C: samtools view manual
... It is clear! Thank you a lot! My mind feels better) ...
written 7 days ago by doramora0
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Comment: C: samtools view manual
... thank you for the website! i have found, that i've got 4 Flag, but i still can't understand, where do i need to use -f ...
written 7 days ago by doramora0
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samtools view manual
... Hi! Could you please explain me the differense between -f and -F in samtools view while filtering bam file? ...
sequence written 7 days ago by doramora0 • updated 7 days ago by Morris_Chair50
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(Closed) Illumina reaction on bad nucleotide quality
... What will write Illumina if my quality will be @@@@? How will it react? Or it'll be possible only if i'll have a null string? ...
sequencing written 25 days ago by doramora0
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Comment: C: bowtie2 tools and reads targeting
... ok, thank you! and when it'll save my reads as .sam i should simply use samtools in terminal, or BBMap has some othee tools to save it in fastqc? ...
written 10 weeks ago by doramora0
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bowtie2 tools and reads targeting
... Hi! I need to target some reads on my sequence and then i need to pick up reads from there as fastq. has bowtie2 such tools, or i need some other programms to do? ...
gene assembly sequence written 10 weeks ago by doramora0
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Comment: C: How to align reads on reference?
... ok now i'm on the one of the first steps of learning bioinformatics, and my teacher gave me so called 'exercises', to understand, how it works. i've made a 'program' in Linux Terminal with help of bowtie2-build, bowtie2, samtools and bedtools it was like smth of this kind: bowtie2-build /path t ...
written 3 months ago by doramora0 • updated 3 months ago by WouterDeCoster37k

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