User: Antonio.Aubry

gravatar for Antonio.Aubry
Reputation:
10
Status:
New User
Location:
Last seen:
5 months, 1 week ago
Joined:
9 months, 1 week ago
Email:
A************@mssm.edu

Posts by Antonio.Aubry

<prev • 8 results • page 1 of 1 • next >
0
votes
2
answers
218
views
2
answers
Comment: A: Writing scripts for a single vs all chromosomes
... Thanks for the answers guys. Much appreciated. ...
written 6 months ago by Antonio.Aubry10
0
votes
3
answers
504
views
3
answers
Comment: A: Hardware requirement for RNA-seq
... Thanks for the answer geno, and for the links AT. ...
written 6 months ago by Antonio.Aubry10
10
votes
3
answers
504
views
9 follow
3
answers
Hardware requirement for RNA-seq
... Hi all, I'm new to RNA-seq and am curious about what the minimal hardware requirements are for processing. I'd prefer to work with a Mac desktop if possible Details: Organism- mouse aligning against reference not de novo diff expression analysis using R ...
R alignment rna-seq hardware written 6 months ago by Antonio.Aubry10 • updated 6 months ago by Lior Pachter370
5
votes
2
answers
218
views
2
answers
Writing scripts for a single vs all chromosomes
... I'm new to RNA-seq data sets (and programming in general) and so far have only analyzed sample data from a single chromosome from various papers. My question is, aside from the amount of time required to process the samples, how much different would a basic shell script look? For instance, here is a ...
script shell rna-seq written 6 months ago by Antonio.Aubry10
0
votes
0
answers
358
views
0
answers
Comment: C: need help with script for hisat2 alignment
... Got it. Thanks...... ...
written 6 months ago by Antonio.Aubry10
0
votes
0
answers
358
views
0
answers
Comment: C: need help with script for hisat2 alignment
... You're correct the path was incorrectt ...
written 6 months ago by Antonio.Aubry10
0
votes
0
answers
358
views
0
answers
Comment: A: need help with script for hisat2 alignment
... I actually just figured it out, but can't figure out how to delete the post. Sorry! ...
written 6 months ago by Antonio.Aubry10
2
votes
0
answers
358
views
0
answers
need help with script for hisat2 alignment
... Hello all, I'm new to bioinformatics and programming in general so apologies if this comes off as naive. I am working with the data set that comes with "Transcript-level expression analysis on RNA-seq experiments with HISAT, stringtie and Ballgown" Pertea et al. 2016. Instead of writing the same c ...
alignment rna-seq hisat2 written 6 months ago by Antonio.Aubry10

Latest awards to Antonio.Aubry

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 583 users visited in the last hour