User: The Original Gtk

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Posts by The Original Gtk

<prev • 19 results • page 1 of 2 • next >
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Answer: A: Where Is Pam 1.0.7 Source (To Generate Pam Substitution Matrices)?
... After some discussion with the good folks at NCBI, I've gotten this update, which is now posted on the NCBI ftp site: As indicated, the code will be updated by NCBI to match the files in the same directory. README for blast/matrices. Last updated 09/10/12. This directory contains matrices produce ...
written 5.0 years ago by The Original Gtk190
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Comment: C: Where Is Pam 1.0.7 Source (To Generate Pam Substitution Matrices)?
... Good suggestion :-) As it turns out, I had written to NCBI at about the same time as my original post. I've been in email conversation with them since. My colleague Chris Hogue also contacted them separately. I can't quote any of their emails here, (because their work for the Federal Government ...
written 5.1 years ago by The Original Gtk190
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Comment: C: Where Is Pam 1.0.7 Source (To Generate Pam Substitution Matrices)?
... I may in future terms or in related courses; there's no opportunity to squeeze in the changes required for this term. ...
written 5.1 years ago by The Original Gtk190
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Comment: C: Where Is Pam 1.0.7 Source (To Generate Pam Substitution Matrices)?
... I had hoped to find something, in part because the 1.0.7 version is dated 13-Aug-03. As for bioinformatics researchers: point taken :-( ...
written 5.1 years ago by The Original Gtk190
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Where Is Pam 1.0.7 Source (To Generate Pam Substitution Matrices)?
... Every PAM substitution matrix on the web begins with a line like # This matrix was produced by "pam" Version 1.0.6 [28-Jul-93] or version 1.0.7. Unfortunately, the pam source code tarball at ftp://ftp.ncbi.nih.gov/blast/matrices/ seems to predate even 1.0.6 (among other things, it doesn't emit t ...
alignment written 5.1 years ago by The Original Gtk190
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Comment: C: Biblatex Stylesheet For Biomed Central Journals Like Bmc Bioinformatics?
... Did you ever do this? I'd be interested in using it (and contributing to it, if still needed) ...
written 5.3 years ago by The Original Gtk190
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Comment: C: Should Biostar Be Switched Over To The Stackexchange Network?
... "loss of control" should be a non-issue, if there is nothing special that needs controlling. ...
written 5.9 years ago by The Original Gtk190
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Comment: C: What Would You Recommend For Great Examples Of Sequence Alignment In Biology?
... Terrific. I wish I could put two answers as the best answers to this question! ...
written 6.0 years ago by The Original Gtk190
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Comment: C: What Would You Recommend For Great Examples Of Sequence Alignment In Biology?
... Very nice segue :-) ...
written 6.1 years ago by The Original Gtk190
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Comment: C: What Would You Recommend For Great Examples Of Sequence Alignment In Biology?
... This is a very nice example, exactly along the lines I was looking for! Thanks! ...
written 6.1 years ago by The Original Gtk190

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Supporter 3.0 years ago, voted at least 25 times.
Popular Question 3.1 years ago, created a question with more than 1,000 views. For What Would You Recommend For Great Examples Of Sequence Alignment In Biology?
Appreciated 4.0 years ago, created a post with more than 5 votes. For What Would You Recommend For Great Examples Of Sequence Alignment In Biology?
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Commentator 4.0 years ago, created a comment with at least 3 up-votes. For C: Should Biostar Be Switched Over To The Stackexchange Network?
Student 4.0 years ago, asked a question with at least 3 up-votes. For What Would You Recommend For Great Examples Of Sequence Alignment In Biology?

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