User: The Original Gtk
The Original Gtk • 190
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Posts by The Original Gtk
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... After some discussion with the good folks at NCBI, I've gotten this update, which is now posted on the NCBI ftp site: As indicated, the code will be updated by NCBI to match the files in the same directory.
README for blast/matrices.
Last updated 09/10/12.
This directory contains matrices produce ...
written 5.0 years ago by
The Original Gtk • 190
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... Good suggestion :-) As it turns out, I had written to NCBI at about the same time as my original post. I've been in email conversation with them since. My colleague Chris Hogue also contacted them separately. I can't quote any of their emails here, (because their work for the Federal Government ...
written 5.1 years ago by
The Original Gtk • 190
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... I may in future terms or in related courses; there's no opportunity to squeeze in the changes required for this term.
...
written 5.1 years ago by
The Original Gtk • 190
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... I had hoped to find something, in part because the 1.0.7 version is dated 13-Aug-03.
As for bioinformatics researchers: point taken :-(
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written 5.1 years ago by
The Original Gtk • 190
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... Every PAM substitution matrix on the web begins with a line like
# This matrix was produced by "pam" Version 1.0.6 [28-Jul-93]
or version 1.0.7. Unfortunately, the pam source code tarball at ftp://ftp.ncbi.nih.gov/blast/matrices/ seems to predate even 1.0.6 (among other things, it doesn't emit t ...
written 5.1 years ago by
The Original Gtk • 190
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... Did you ever do this? I'd be interested in using it (and contributing to it, if still needed)
...
written 5.3 years ago by
The Original Gtk • 190
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... "loss of control" should be a non-issue, if there is nothing special that needs controlling.
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written 5.9 years ago by
The Original Gtk • 190
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... Terrific. I wish I could put two answers as the best answers to this question! ...
written 6.0 years ago by
The Original Gtk • 190
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... Very nice segue :-) ...
written 6.1 years ago by
The Original Gtk • 190
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... This is a very nice example, exactly along the lines I was looking for! Thanks! ...
written 6.1 years ago by
The Original Gtk • 190
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