User: vmax

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vmax0
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Posts by vmax

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Best practices for analysing protein (amino acid) sequences?
... My background is in RNA-seq, but I’m now starting to work with protein (amino acid) sequences. There is a lot of literature for best practices and quality checks throughout RNA-seq analysis (from raw reads to say differential expression analysis or variant calling). I’m having trouble finding sim ...
alignment sequence written 24 days ago by vmax0
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Estimating individual batch factors
... I’m planning to analyse RNA-seq data that was obtained from a few different batches. I’ll use batch as a covariate in my model, but I would still like to estimate the impact of known, individual batch factors (e.g. read length, read depth, # of mapped reads, prep techniques). Initially, I thought to ...
rna-seq written 9 months ago by vmax0 • updated 9 months ago by Kevin Blighe48k

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