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Posts by vmax
... My background is in RNA-seq, but I’m now starting to work with protein (amino acid) sequences. There is a lot of literature for best practices and quality checks throughout RNA-seq analysis (from raw reads to say differential expression analysis or variant calling). I’m having trouble finding sim ...
... I’m planning to analyse RNA-seq data that was obtained from a few different batches. I’ll use batch as a covariate in my model, but I would still like to estimate the impact of known, individual batch factors (e.g. read length, read depth, # of mapped reads, prep techniques). Initially, I thought to ...
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