User: Maciej Motyka

gravatar for Maciej Motyka
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40
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@maciejmotyka
Last seen:
1 month ago
Joined:
1 year, 5 months ago
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m************@gmail.com

Posts by Maciej Motyka

<prev • 4 results • page 1 of 1 • next >
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Comment: A: The Biostar Handbook. A bioinformatics e-book for beginners.
... There are now 4 separate books in total, however, all the links lead to the index page of The Biostars Handbook so it's impossible to check what's inside each of them. I'd like to know what topics does the "Coronavirus Genome Analysis" cover. Could you please fix it? ...
written 4 weeks ago by Maciej Motyka40
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Answer: A: Best way for phylogenetic tree with missing data
... I don't know what the best way is, but you can align the genes separately and then compare the 8 trees using [treespace](https://pubmed.ncbi.nlm.nih.gov/28374552/) and select the most representative tree yourself or let treespace create it for you based on the input trees. Additionally, this method ...
written 4 weeks ago by Maciej Motyka40
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Comment: C: REVIGO equivalent for Reactome/KEGG/WikiPathways
... For Reactome and KEGG, I have tried http://bioinformatics.cing.ac.cy/PathwayConnector, which has few clustering algorithms, but the visualization is messy with a large number (100 - 150) of pathways. Also, this tool adds some additional "connecting" pathways to the list, which is not desired and use ...
written 12 months ago by Maciej Motyka40
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REVIGO equivalent for Reactome/KEGG/WikiPathways
... Hello everyone! I've been at Biostars for a while, finding tons of valuable info. This will be my first question. Imagine that you have a long list of GO terms from enrichment analysis. It's hard to see the bigger picture and even harder to present it. You can use REVIGO or GOSemSim or simplify fro ...
wikipathways reactome pathway analysis kegg written 12 months ago by Maciej Motyka40 • updated 12 months ago by Biostar ♦♦ 20

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