User: khatami.mahshid

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Posts by khatami.mahshid

<prev • 11 results • page 1 of 2 • next >
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Comment: C: Number of Comparisons in Bonferroni Correction
... but each variant is independent and I do not compare variants with each other. ...
written 6 days ago by khatami.mahshid10
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Number of Comparisons in Bonferroni Correction
... Hi, I have a list of variants and each of them has a different number of donors in 3 groups. for example: var1: group1:10- group2:20- group3:25 var2: group1:20- group2:15- group3:20 var3: ... I have a p-value of each variant, but I don't know wha ...
bonferroni snp multiple testing written 6 days ago by khatami.mahshid10 • updated 6 days ago by ATpoint21k
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Does any SNP has rs number?
... Hi all, I have some SNPs and I find out some of them has no rs number? is this right or I am wrong? I searched for rs number through MySQL query from UCSC. thank you ...
snp written 10 days ago by khatami.mahshid10 • updated 10 days ago by ATpoint21k
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RS number in UCSC
... Hi, I have SNP and I use [this tool][1] to find the rs-number of my SNP. but it has 2 columns: ChromStart, ChromEnd. I don't know which of this column should be compared with my SNP position. thank you :) [1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=742635327_CzdZBomTaDjswiOjarufN2iFdO ...
snp written 21 days ago by khatami.mahshid10 • updated 21 days ago by Pierre Lindenbaum122k
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How to check if a SNP exist in eQTL
... Hi all I wonder if there is a database in eQTL that I can download and check if the relationship between an SNP and gene expression of a transcript exists or not. thank you :) ...
gene snp rna-seq written 23 days ago by khatami.mahshid10
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VCF File type
... Hi all, I have VCF File for all chromosomes. I wonder if any of SNPs in these chromosomes have groups except 0/0-0/1-1/0-1/1? thanks ...
snp written 29 days ago by khatami.mahshid10 • updated 29 days ago by manuel.belmadani1.1k
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VCF Format in 1000 Genome
... I am working with 1000 Genome VCF files, it has a format like this : CHROM - POS - ID - REF - ALT - QUAL - FILTER - INFO - FORMAT - SAMPLE SAMPLE column is like this : HG00117 - HG00215 - ... I can't understand what is this column. can anyone help me, please? Thanks ...
snp written 5 months ago by khatami.mahshid10
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FastQ files chromosome determination
... Hi all, I have fastq files from [this link.][1] I am new to Bio and I don't know this dna sequence in fastq are for which chromosome? can anybody help me please? Thanks [1]: https://www.ebi.ac.uk/arrayexpress/experiments/E-GEUV-1/samples/ ...
genome written 5 months ago by khatami.mahshid10 • updated 5 months ago by h.mon27k
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Start Codon in Translate() in R
... Hi all, I wanted to use function translate() in R to translate a DNA to a protein. what I wrote is this : DNA <- DNAString(dna_temp) protein <- translate(DNA) but in this code start codon is not defined, so it will start from the first letter and doesn't check if it is start codon or ...
gene R written 5 months ago by khatami.mahshid10 • updated 3 months ago by Biostar ♦♦ 20
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Comment: C: Finding Library-type of my data
... yes i saw this and i searched for library type illumina hiseq used. but i didn't find anything. ...
written 6 months ago by khatami.mahshid10

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