User: zion22

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zion220
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Posts by zion22

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Comment: C: How remove gaps from gff file?
... hi, scaffold_1 JGI exon 3645 3780 . - . name "estExt_Genewise1.C_10001"; transcriptId 643699 scaffold_1 JGI CDS 3673 3780 . - 0 name "estExt_Genewise1.C_10001"; proteinId 643589; exonNumber 9 scaffold_1 JGI ...
written 9 days ago by zion220 • updated 9 days ago by genomax62k
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Comment: C: How remove gaps from gff file?
... like "*", "-", " ", "*" or "?" ...
written 10 days ago by zion220
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Problem training Augustus (prediction genes)
... Hello Thank you so much for reading this post, I'd like to come to you for help. I have tried to train augustus (following the tutorial described in: http://computationalgenomicsiicb.blogspot.com/2015/07/using-scipio-for-generating-training.html), but when I executed the script "*etraining*": ...
genome gene software error written 10 days ago by zion220
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Comment: C: help to extract data
... Sorry to bother you so much. This was the result. **R1_001.fastq.gz:** @M03377:2:000000000-AJN1Y:1:1101:20555:1382 1:N:0:0 TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTCTTTTTCTCTTTTTTTTTTCTCTTTTCTTCTTTCTTTTCTCTTTCTTCTTCTTTTCCTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTCTTTTTTCTTTCTTTCTTTTTTTTCTTTTTTTTCTT ...
written 5 weeks ago by zion220 • updated 5 weeks ago by genomax62k
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Comment: C: help to extract data
... that was the result: `0: 5821378` ...
written 5 weeks ago by zion220
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Comment: C: help to extract data
... sorry, where can you find this file? ...
written 5 weeks ago by zion220
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Answer: A: help to extract data
... Hi. Thank you so much for helping me. I executed the command as you told me, which was next: demuxbyname.sh in1=/info/Samples/cdv/R1_001.fastq.gz in2=/info/Samples/cdv/R2_001.fastq.gz out1=out_%_R1.fq.gz out2=out_%_R2.fq.gz prefixmode=f names=CTCTCTAT+TAAGGCGA,CTCTCTAT+CGTACTAG,CTCTCTAT+AGGCAG ...
written 5 weeks ago by zion220
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help to extract data
... Hi Thanks for reading my message. first of all, I am very new to this wonderful area, and I would like someone to help me with a question. I have two raw data (R1 and R2) from illumina MIseq, within them are three samples, which have two pairs of different index sequences each. I would like to know ...
next-gen written 6 weeks ago by zion220

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