User: peflanag

gravatar for peflanag
peflanag0
Reputation:
0
Status:
New User
Last seen:
3 months ago
Joined:
3 months, 1 week ago
Email:
p*******@tcd.ie

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by peflanag

<prev • 5 results • page 1 of 1 • next >
0
votes
0
answers
166
views
0
answers
Comment: C: FASTA to SAM for Tablet Assembly Visulisations
... I tried again with --keep 2 and --keep 3 but it hasn't worked for either. I think there was a typo on the github website. the text said --keep two but the table said --keep 3. I have posted on the github issues page. Cheers for your help! ...
written 3 months ago by peflanag0
0
votes
0
answers
166
views
0
answers
Comment: C: FASTA to SAM for Tablet Assembly Visulisations
... I was never using the --keep command. Which I assumed kept everything but can't seem to find the .sam file. I am re-running the unicycler command now with the --keep 3 command ...
written 3 months ago by peflanag0
0
votes
0
answers
166
views
0
answers
Comment: A: FASTA to SAM for Tablet Assembly Visulisations
... Oh cheers, I didn't see that in my output folder! I appreciate the help. ...
written 3 months ago by peflanag0
0
votes
0
answers
166
views
0
answers
Comment: A: FASTA to SAM for Tablet Assembly Visulisations
... Cheers for the quick reply. I'm using minimap 2 in the Unicycler command " unicycler -l FASTQ.gz -o OUT_DIR " when generating the aligned file. However the output is in FASTA and the visualiser Tablet wants it in SAM or indexed BAM. Thats why I'm wondering can I convert the aligned outputted FASTA ...
written 3 months ago by peflanag0
1
vote
0
answers
166
views
0
answers
FASTA to SAM for Tablet Assembly Visulisations
... Hi, I'm very new to the world of terminal command and bioinformatics. I currently use ONT for WGS in my lab. I have the FASTQ and FASTA files of my sequence reads that have been basecalled and trimmed with albacore and porechop. y query to the community is: The file containing the FASTA reads I ha ...
assembly next-gen alignment sequencing written 3 months ago by peflanag0

Latest awards to peflanag

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1411 users visited in the last hour