Moderator: iw9oel_ad
iw9oel_ad ♦ 6.0k
- Reputation:
- 6,040
- Status:
- Trusted
- Location:
- Last seen:
- 3 years, 9 months ago
- Joined:
- 9 years ago
- Email:
- a@b.c.com
Posts by iw9oel_ad
<prev
• 197 results •
page 1 of 20 •
next >
3
votes
3
answers
5.6k
views
3
answers
... As you point out, the SAM spec is unambiguous on this; BAM data are 0-based and SAM data are 1-based (sections 1.2 and 3.2). A feature at base 0 in a BAM file will be at base 1 when the data are exported as SAM.
...
written 6.9 years ago by
iw9oel_ad ♦ 6.0k
6
votes
1
answer
2.1k
views
1
answers
... I use Protege for OWL ontologies because I find OBOedit's UI, shall we say, idiosyncratic. Protege has nice features like reasoner plugins that can spot errors and make inferences. However, it is complex and takes some time to learn. The documentation is quite good, which helps. I'm certainly not a ...
written 7.1 years ago by
iw9oel_ad ♦ 6.0k
1
vote
3
answers
3.3k
views
3
answers
... "Full object orientation" isn't a meaningful term. In fact R has more object systems than many languages; 3 at the last count, these being S3, S4 and R5. The S4 model, having a generic functions and multiple dispatch, is arguably superior to Java's single-dispatch model for writing flexible code. ...
written 7.4 years ago by
iw9oel_ad ♦ 6.0k
0
votes
2
answers
2.5k
views
2
answers
... I didn't think about phylogenetic cases. Thanks for catching that. ...
written 7.6 years ago by
iw9oel_ad ♦ 6.0k
4
votes
2
answers
2.5k
views
2
answers
... In general there is no reason why a scoring matrix used in dynamic programming has to be symmetric. However, the most commonly used ones are symmetric, for example when making an alignment.
Usually a scoring matrix is chosen because it models a biological situation. If your biological model requires ...
written 7.6 years ago by
iw9oel_ad ♦ 6.0k
0
votes
2
answers
2.5k
views
2
answers
... Presumably you mean a scoring matrix in the context of sequence alignment? Please try to improve your questions. ...
written 7.6 years ago by
iw9oel_ad ♦ 6.0k
0
votes
2
answers
1.4k
views
2
answers
Comment:
C: Simulate 1, 3 Copies
... If you have more information to add, please edit your original question instead of putting it here. This helps maintain the quality of Biotstar's answers. Thanks. ...
written 7.6 years ago by
iw9oel_ad ♦ 6.0k
2
votes
4
answers
13k
views
4
answers
... Locus NM_001129809 in Genbank is Strongylocentrotus purpuratus lefty (LOC577374), mRNA.
'mRNA' is an abbreviation for 'messenger RNA'. The Genbank entry is annotated with a CDS feature at bases 112..1311. 'CDS' is an abbreviation for 'coding sequence'.
Is the problem that you do not understand the c ...
written 7.6 years ago by
iw9oel_ad ♦ 6.0k
3
votes
4
answers
2.4k
views
4
answers
... What books and topics did you find while doing the literature search for your project? In what way were they not useful? ...
written 7.6 years ago by
iw9oel_ad ♦ 6.0k
3
votes
4
answers
8.1k
views
4
answers
... See Rule 4 in the document linked from the very top of the page. Or put the terms 'trim fastq' into any search engine. Answer is on the first page. ...
written 7.6 years ago by
iw9oel_ad ♦ 6.0k
Latest awards to iw9oel_ad
Appreciated
4.3 years ago,
created a post with more than 5 votes.
For C: How To Find Out The Mismatchs Of An Alignment Entry In The Sam File?
Appreciated
4.3 years ago,
created a post with more than 5 votes.
For A: Bwa Option That Stops After N Minutes
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: How To Generate Mutations In Sequences Of A Fasta File?
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Bwa Option That Stops After N Minutes
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Tracking The Version Of Third Party Tools Used
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Determine Where Is My Oligo Probe In The Gene? In Exonic Region Or Interonic Reg
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: A Universal Format For Expression Data?
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Where Can I Find Fastq Data (Ngs Raw Data) And Published Results?
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Huge Ngs Data Storage And Transferring
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Getting Bed File Output From Ucsc Via Mysql
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Wrong Taxonomic Information On Ncbi
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: How Can I Get These Information About Bam Files?
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Genome Annotation Quality Measure
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Counting Short-Read Gene Alignments With Bowtie/Tophat.
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: How Can I Get Coding Sequences For A List Of Genes?
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: R - Append Item Iteratively To Matrix?
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: How Can I Convert Hmmer Hmm Descriptions To Psi-Blast Pssms?
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Perl Print Nextline From Within While Loop?
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Please Suggest Good Read To Understand Sff To Fasta Conversion
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For C: How Can I Convert Bam To Sam?
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For A: Using Multiple Parent Values In Gff3 Format?
Appreciated
6.9 years ago,
created a post with more than 5 votes.
For C: How To Find Out The Mismatchs Of An Alignment Entry In The Sam File?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1044 users visited in the last hour