Moderator: iw9oel_ad
iw9oel_ad ♦ 6.0k
- Reputation:
- 6,000
- Status:
- Trusted
- Location:
- Last seen:
- 3 years, 1 month ago
- Joined:
- 8 years, 4 months ago
- Email:
- a@b.c.com
Posts by iw9oel_ad
<prev
• 197 results •
page 1 of 20 •
next >
3
votes
3
answers
4.8k
views
3
answers
... As you point out, the SAM spec is unambiguous on this; BAM data are 0-based and SAM data are 1-based (sections 1.2 and 3.2). A feature at base 0 in a BAM file will be at base 1 when the data are exported as SAM.
...
written 6.3 years ago by
iw9oel_ad ♦ 6.0k
6
votes
1
answer
1.9k
views
1
answers
... I use Protege for OWL ontologies because I find OBOedit's UI, shall we say, idiosyncratic. Protege has nice features like reasoner plugins that can spot errors and make inferences. However, it is complex and takes some time to learn. The documentation is quite good, which helps. I'm certainly not a ...
written 6.4 years ago by
iw9oel_ad ♦ 6.0k
1
vote
3
answers
3.1k
views
3
answers
... "Full object orientation" isn't a meaningful term. In fact R has more object systems than many languages; 3 at the last count, these being S3, S4 and R5. The S4 model, having a generic functions and multiple dispatch, is arguably superior to Java's single-dispatch model for writing flexible code. ...
written 6.7 years ago by
iw9oel_ad ♦ 6.0k
0
votes
2
answers
2.2k
views
2
answers
... I didn't think about phylogenetic cases. Thanks for catching that. ...
written 6.9 years ago by
iw9oel_ad ♦ 6.0k
4
votes
2
answers
2.2k
views
2
answers
... In general there is no reason why a scoring matrix used in dynamic programming has to be symmetric. However, the most commonly used ones are symmetric, for example when making an alignment.
Usually a scoring matrix is chosen because it models a biological situation. If your biological model requires ...
written 6.9 years ago by
iw9oel_ad ♦ 6.0k
0
votes
2
answers
2.2k
views
2
answers
... Presumably you mean a scoring matrix in the context of sequence alignment? Please try to improve your questions. ...
written 6.9 years ago by
iw9oel_ad ♦ 6.0k
0
votes
2
answers
1.3k
views
2
answers
Comment:
C: Simulate 1, 3 Copies
... If you have more information to add, please edit your original question instead of putting it here. This helps maintain the quality of Biotstar's answers. Thanks. ...
written 6.9 years ago by
iw9oel_ad ♦ 6.0k
2
votes
4
answers
11k
views
4
answers
... Locus NM_001129809 in Genbank is Strongylocentrotus purpuratus lefty (LOC577374), mRNA.
'mRNA' is an abbreviation for 'messenger RNA'. The Genbank entry is annotated with a CDS feature at bases 112..1311. 'CDS' is an abbreviation for 'coding sequence'.
Is the problem that you do not understand the c ...
written 6.9 years ago by
iw9oel_ad ♦ 6.0k
3
votes
4
answers
2.2k
views
4
answers
... What books and topics did you find while doing the literature search for your project? In what way were they not useful? ...
written 6.9 years ago by
iw9oel_ad ♦ 6.0k
3
votes
4
answers
7.4k
views
4
answers
... See Rule 4 in the document linked from the very top of the page. Or put the terms 'trim fastq' into any search engine. Answer is on the first page. ...
written 6.9 years ago by
iw9oel_ad ♦ 6.0k
Latest awards to iw9oel_ad
Appreciated
3.6 years ago,
created a post with more than 5 votes.
For C: How To Find Out The Mismatchs Of An Alignment Entry In The Sam File?
Appreciated
3.6 years ago,
created a post with more than 5 votes.
For A: Bwa Option That Stops After N Minutes
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: What Are The Most Common Stupid Mistakes In Bioinformatics?
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Gff3 + Fasta To Genbank (Augustus Training Set)
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Code Golf: Mean Length Of Fasta Sequences
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Obsolete Terms In Ontologies
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Split Fastq File Into Different Files Only Comprising One Chromosome Each
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Scoring Matrix Is It Always A Symmetrical One ?
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: What Wetlab Techniques Does A Bioinformatician Need To Be Able To Perform, If An
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Coordinates Of Par Regions On Ensembl Y Chromosome
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: How To Detect Horizontal Gene Transfer?
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Generating Protein Consensus Sequence For Blast Input
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Reproducible Research: A More General Sweave?
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Must I Have The .Sff Files In Order To Run Mira3
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Automate High-Volume Sequence Annotation And Genbank Submission
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Best Predicate For Association With Go Terms?
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Please Recommend A *Good* Ontology Editor For Biomedical Ontologies
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Working With Large *.Bam Files
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: How To Decompress 1000Genomes Bgzip-Compressed Files Using Java
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: What Ngs Read Simulators Are Available For Paired-End Data?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1864 users visited in the last hour