Moderator: biobot 0.0.77.a.1099

Reputation:
6,100
Status:
Trusted
Location:
UK
Last seen:
5 months, 1 week ago
Joined:
10 years, 7 months ago
Email:
a@b.c.com

The product of a machine learning experiment gone awry.

Posts by biobot 0.0.77.a.1099

<prev • 194 results • page 1 of 20 • next >
3
votes
3
answers
7.3k
views
3
answers
Answer: A: Is Bam One-Based Or Zero-Based?
... As you point out, the SAM spec is unambiguous on this; BAM data are 0-based and SAM data are 1-based (sections 1.2 and 3.2). A feature at base 0 in a BAM file will be at base 1 when the data are exported as SAM. ...
written 8.5 years ago by biobot 0.0.77.a.10996.1k
6
votes
1
answer
2.4k
views
1
answers
Answer: A: Please Recommend A *Good* Ontology Editor For Biomedical Ontologies
... I use Protege for OWL ontologies because I find OBOedit's UI, shall we say, idiosyncratic. Protege has nice features like reasoner plugins that can spot errors and make inferences. However, it is complex and takes some time to learn. The documentation is quite good, which helps. I'm certainly not a ...
written 8.7 years ago by biobot 0.0.77.a.10996.1k
1
vote
3
answers
3.7k
views
3
answers
Comment: C: In Writing Biomedical Applications, Which Disadvantages Of R/Advantages Of Pytho
... "Full object orientation" isn't a meaningful term. In fact R has more object systems than many languages; 3 at the last count, these being S3, S4 and R5. The S4 model, having a generic functions and multiple dispatch, is arguably superior to Java's single-dispatch model for writing flexible code. ...
written 9.0 years ago by biobot 0.0.77.a.10996.1k
0
votes
2
answers
3.0k
views
2
answers
Comment: C: Scoring Matrix Is It Always A Symmetrical One ?
... I didn't think about phylogenetic cases. Thanks for catching that. ...
written 9.2 years ago by biobot 0.0.77.a.10996.1k
4
votes
2
answers
3.0k
views
2
answers
Answer: A: Scoring Matrix Is It Always A Symmetrical One ?
... In general there is no reason why a scoring matrix used in dynamic programming has to be symmetric. However, the most commonly used ones are symmetric, for example when making an alignment. Usually a scoring matrix is chosen because it models a biological situation. If your biological model requires ...
written 9.2 years ago by biobot 0.0.77.a.10996.1k
0
votes
2
answers
3.0k
views
2
answers
Comment: C: Scoring Matrix Is It Always A Symmetrical One ?
... Presumably you mean a scoring matrix in the context of sequence alignment? Please try to improve your questions. ...
written 9.2 years ago by biobot 0.0.77.a.10996.1k
0
votes
2
answers
1.6k
views
2
answers
Comment: C: Simulate 1, 3 Copies
... If you have more information to add, please edit your original question instead of putting it here. This helps maintain the quality of Biotstar's answers. Thanks. ...
written 9.2 years ago by biobot 0.0.77.a.10996.1k
2
votes
4
answers
14k
views
4
answers
Answer: A: How Can I Determine The Coding Sequence Of A Gene, Given The Genbank Accession N
... Locus NM_001129809 in Genbank is Strongylocentrotus purpuratus lefty (LOC577374), mRNA. 'mRNA' is an abbreviation for 'messenger RNA'. The Genbank entry is annotated with a CDS feature at bases 112..1311. 'CDS' is an abbreviation for 'coding sequence'. Is the problem that you do not understand the c ...
written 9.2 years ago by biobot 0.0.77.a.10996.1k
3
votes
4
answers
2.8k
views
4
answers
Comment: C: Entering Into Bioinformatics Domain
... What books and topics did you find while doing the literature search for your project? In what way were they not useful? ...
written 9.2 years ago by biobot 0.0.77.a.10996.1k
3
votes
4
answers
9.4k
views
4
answers
Comment: C: Cut The Reads Of A Paired End Fastq File
... See Rule 4 in the document linked from the very top of the page. Or put the terms 'trim fastq' into any search engine. Answer is on the first page. ...
written 9.2 years ago by biobot 0.0.77.a.10996.1k

Latest awards to biobot 0.0.77.a.1099

Scholar 5.4 years ago, created an answer that has been accepted. For A: R - Append Item Iteratively To Matrix?
Good Answer 5.4 years ago, created an answer that was upvoted at least 5 times. For A: Bwa Option That Stops After N Minutes
Scholar 5.4 years ago, created an answer that has been accepted. For A: Exome Sequencing: Masking The Non-Genic Sequences ?
Appreciated 5.4 years ago, created a post with more than 5 votes. For A: Bwa Option That Stops After N Minutes
Scholar 5.4 years ago, created an answer that has been accepted. For A: R - Pairwise Combinations Of Rows From Table?
Scholar 5.4 years ago, created an answer that has been accepted. For A: Alignment Algorithm
Scholar 5.4 years ago, created an answer that has been accepted. For A: How To Filter Bam File
Good Answer 5.4 years ago, created an answer that was upvoted at least 5 times. For A: Huge Ngs Data Storage And Transferring
Scholar 5.4 years ago, created an answer that has been accepted. For A: Split Fastq File Into Different Files Only Comprising One Chromosome Each
Good Answer 5.4 years ago, created an answer that was upvoted at least 5 times. For A: A Universal Format For Expression Data?
Appreciated 5.9 years ago, created a post with more than 5 votes. For C: How To Find Out The Mismatchs Of An Alignment Entry In The Sam File?
Appreciated 5.9 years ago, created a post with more than 5 votes. For A: Bwa Option That Stops After N Minutes
Appreciated 8.5 years ago, created a post with more than 5 votes. For A: How Can I Get These Information About Bam Files?
Appreciated 8.5 years ago, created a post with more than 5 votes. For A: Wrong Taxonomic Information On Ncbi
Appreciated 8.5 years ago, created a post with more than 5 votes. For C: How Can I Convert Bam To Sam?
Appreciated 8.5 years ago, created a post with more than 5 votes. For A: Getting Bed File Output From Ucsc Via Mysql
Appreciated 8.5 years ago, created a post with more than 5 votes. For A: Huge Ngs Data Storage And Transferring
Appreciated 8.5 years ago, created a post with more than 5 votes. For A: A Universal Format For Expression Data?
Appreciated 8.5 years ago, created a post with more than 5 votes. For A: Bed Files Comparison
Appreciated 8.5 years ago, created a post with more than 5 votes. For A: Tracking The Version Of Third Party Tools Used
Appreciated 8.5 years ago, created a post with more than 5 votes. For A: How To Generate Mutations In Sequences Of A Fasta File?
Appreciated 8.5 years ago, created a post with more than 5 votes. For A: Bwa Option That Stops After N Minutes
Appreciated 8.5 years ago, created a post with more than 5 votes. For C: How To Find Out The Mismatchs Of An Alignment Entry In The Sam File?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2116 users visited in the last hour
_