User: bioinf_ukraine

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Posts by bioinf_ukraine

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How to upload and annotate a .fasta file using myRAST Linux shell commands without a GUI?
... How to upload and annotate a .fasta file using myRAST Linux shell commands without a GUI? And is there any myMG-RAST and tutorials how to upload and annotate genomes in Linux Shell or Python? ...
mgrast annotation rast written 5 months ago by bioinf_ukraine0
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Comment: C: Is there any open-source Illumina bacterial genome mapping and annotation websit
... I have a Prokka, however I need to send a fasta contigs to the RAST via the Linux Shell or a Python code, is it possible somehow? ...
written 7 months ago by bioinf_ukraine0
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Comment: C: How to submit a Pilon fasta output to the RAST annotation service using Shell or
... thank you, can you share a code example or a tutorial, please? ...
written 7 months ago by bioinf_ukraine0
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Is there any open-source Illumina bacterial genome mapping and annotation website?
... Is there any open-source Illumina bacterial genome mapping and annotation website, using RAST or similar in an automated way. Need software codes to develop a similar service. Thank you. ...
software annotation open source mapping service written 7 months ago by bioinf_ukraine0 • updated 7 months ago by h.mon27k
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How to submit a Pilon fasta output to the RAST annotation service using Shell or Python code?Are there any clear code examples on how to submit the input and to retrieve the RAST annotations?
... How to submit a Pilon fasta output to the RAST annotation service using Shell or Python code? Are there any clear code examples on how to submit the input and to retrieve the RAST or the MG RAST annotations? What software besides Prokka can do a similar task? ...
fasta python shell rast written 7 months ago by bioinf_ukraine0

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