User: namarino

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namarino0
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Posts by namarino

<prev • 4 results • page 1 of 1 • next >
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Limiting memory usage aligner MAFFT uses
... Hello all! I'm using MAFFT to do a L-INS-i alignment of about 35,000 sequences. I'm running MAFFT in the Linux command line, but I'm running into the issue that it is using basically all of the memory on our server. I've tried using the `-m` command to try to allot memory, but it didn't work. Does a ...
alignment written 18 days ago by namarino0 • updated 18 days ago by Brice Sarver2.8k
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Comment: C: How to get a FASTA file where you filter by length to exclude sortest and longes
... Thank you! I hadn't been much aware of seqkit, but will definitely start implementing it. ...
written 6 months ago by namarino0
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Comment: C: How to get a FASTA file where you filter by length to exclude sortest and longes
... Thank you! It was my first post, so I will definitely apply this in the future ...
written 6 months ago by namarino0
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How to get a FASTA file where you filter by length to exclude sortest and longest 10%
... Hello, I have a pretty big data FASTA file with protein sequences. I would like to filter it by length so that it excludes sequences that are at the ends (ie: Cut shortest 10% and the longest 10%). I've looked through the forums, but only see ones where people filter by specific length So far, I'v ...
fasta alignment sequence linux awk written 6 months ago by namarino0 • updated 6 months ago by RamRS23k

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