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Posts by linuxborg2
... 1: I have moved the source code to GitHub: https://github.com/ProfHariSeldon/closestBedPAR-CLIP 2: Source code is 129 KB (.s, .awk, .py, and .rmd), input files are 291 MB (batchFile folder). The output of a sample run is included so that you may verify that your run on the sample input is running ...
Tutorial: Using Bedtools Closest (closestBed) to make distance histograms of protein binding frequency near all types of pre-RNA junctions (e.g. exon-intron and intron-exon)
... To plot distance histograms of protein binding sites to all types of pre-RNA junctions (intron-exon and exon-intron, etc.), bedtools closest requires post-processing to isolate pertinent information. A batch script that does that post-processing is linked below, and it also uses ngs.plot.r to creat ...
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