User: Eisuan

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Eisuan0
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Posts by Eisuan

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Tool for obtaning genes modulated by a list of TF
... Thank you so much :) Your suggestions were really helpfull ...
written 18 days ago by Eisuan0
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Tool for obtaning genes modulated by a list of TF
... Given a list of TFs, are there tools that are able to give me the list of genes known to be regulated by these TFs? ...
gene written 23 days ago by Eisuan0 • updated 22 days ago by natasha.sernova3.6k
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Comment: C: Trascription factor binding sites prediction using FIMO
... It is funny because all the time I try to apply some tools that search matches in a database using this promoter region I find few / no results. I had the same experience using AME (Meme Suite) for this region. I am pretty sure there are no problems with the promoter sequence I am using. ...
written 5 weeks ago by Eisuan0
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Comment: C: Trascription factor binding sites prediction using FIMO
... Thank you for this suggestion. I've just tried using that tool but unfortunately, it doesn't reveal any TF in the region of interest neither using the ENSEMBL gene ID (and modifying upstream/downstream analysis settings). PS. Yes, it's a human gene and I am using hg38 reference genome. ...
written 5 weeks ago by Eisuan0
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Trascription factor binding sites prediction using FIMO
... Hello everyone! In these days I was performing TF binding sites prediction using FIMO (MEME Suite). I am trying to check if there are TF binding sites for TF related to biological processes at the promoter level of the gene in my interest. I am performing the analysis using; - Proximal promot ...
gene promoter written 5 weeks ago by Eisuan0 • updated 14 days ago by Biostar ♦♦ 20
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Trascription factor binding site prediction
... Hello everyone! I would like to ask adiveces for trascription factor binding site prediction. My co-supervisor asked me to check if a particular human gene promoter has potential binding site for a TF. I have tried solving out this problem by coding a matlab code based upon information theory b ...
gene promoter written 6 months ago by Eisuan0 • updated 6 months ago by husensofteng120

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