User: jaybee
jaybee • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- South Korea
- Last seen:
- 5 hours ago
- Joined:
- 2 weeks, 1 day ago
- Email:
- j***********@gmail.com
|| Instrumentation and Control Er. || MS Scholar in BioNano Science and Technology || Academic Research Scholar in Bioinformatics ||
| Molecular Genetics | Geneset Analysis | RStudio | Biostatistics | Nanotechnology | Genome and Exome Sequencing |
Posts by jaybee
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... I agree. Maybe I should have been specific about my post. However, the code you showed me, did not work. umm, after running code, you showed me, it gave me a lot of errors. It could not identify vcf.list and other problems.
**Failed to open vcf.list: unknown file type**
This was the main error I ...
written 6 hours ago by
jaybee • 10
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... To merge multiple vcf files into a single vcf file from different samples,
we can try the code below:
/PATH/to/bcftools merge Home/data/*vcf.gz -Oz -o Merged.vcf.gz
[considering that your files A.vcf.gz , B.vcf.gz and so on are in the Home directory, under the folder data]
[If your bcfto ...
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Answer:
A: Merging vcf files ?
... You can try `/PATH/to/bcftools merge Home/data/*vcf.gz -Oz -o Merged.vcf.gz`
[considering that your files A.vcf.gz , B.vcf.gz and so on are in the Home directory, under the folder data]
[If your bcftools is installed in the usr/bin directory then simply use:
/usr/bin/bcftools merge Home/data/ ...
written 10 hours ago by
jaybee • 10
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... You can try `/PATH/to/bcftools merge Home/data/*vcf.gz -Oz -o Merged.vcf.gz`
[considering that your files A.vcf.gz , B.vcf.gz and so on are in the Home directory, under the folder data]
[If your bcftools is installed in the usr/bin directory then simply use:
/usr/bin/bcftools merge Home/data/ ...
written 10 hours ago by
jaybee • 10
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... You can try `/PATH/to/bcftools merge Home/data/*vcf.gz -Oz -o Merged.vcf.gz`
[considering that your files A.vcf.gz , B.vcf.gz and so on are in the Home directory, under the folder data]
[If your bcftools is installed in the usr/bin directory then simply use:
/usr/bin/bcftools merge Home/data/ ...
written 11 hours ago by
jaybee • 10
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... after I run
echo `$command` ;
It gives me error message:
Failed to open vcf.list: unknown file type
...
written 1 day ago by
jaybee • 10
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... Also, I do not find learning bioinformatics frustrating. That is a very poor usage of the word "frustrating". Please do not use such words and try and change what I wanted to say into your own perspective.
Thank you! ...
written 1 day ago by
jaybee • 10
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... If you think we do not benefit from this, then I really don't have anything to say. We all benefit from learning and/or teaching. ...
written 1 day ago by
jaybee • 10
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... And, I did. But nothing gives you any right to tell anyone if their question is small or big! :) ...
written 1 day ago by
jaybee • 10
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... By Not answering my question you just pushed me to do better and take this as a challenge. The world doesn't stop when one person who knows the subject doesn't wanna help others learn because they ask smaller questions which can be easily googled. Sometimes, an explanation from a teacher (in this c ...
written 3 days ago by
jaybee • 10
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