User: saumya.sharma1509

Reputation:
0
Status:
New User
Last seen:
10 months, 2 weeks ago
Joined:
1 year, 1 month ago
Email:
s****************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by saumya.sharma1509

<prev • 10 results • page 1 of 1 • next >
0
votes
0
answers
416
views
0
answers
Comment: C: i want to convert .ht2 files into FASTA file
... in command which file will be used? the original reference genome or .dict file or .fai file? ...
written 10 months ago by saumya.sharma15090
0
votes
0
answers
416
views
0
answers
Comment: C: i want to convert .ht2 files into FASTA file
... okayyy...can you please guide me any other way to find haplotypes? is there any way to obtain haplotypes from a vcf file? please provide me with the command for making ".dict file"? can you make me clear about the gatk command? I have to input ".dict file" "fai.file" while using the command or I ha ...
written 10 months ago by saumya.sharma15090
0
votes
0
answers
416
views
0
answers
Comment: A: i want to convert .ht2 files into FASTA file
... I have created a ".dict" file from picard tools. but then I have the error ...
written 10 months ago by saumya.sharma15090
0
votes
0
answers
416
views
0
answers
Comment: C: i want to convert .ht2 files into FASTA file
... it generates a ".fai" file but when I use that file on GATK it says not supported file format. ...
written 10 months ago by saumya.sharma15090
0
votes
0
answers
416
views
0
answers
Comment: C: i want to convert .ht2 files into FASTA file
... because GATK haplotypecaller needs fasta file of the indexed reference genome. if I am indexing my reference file again from samtools it says "not supported file format". so I think I need to convert the indexed files which I have obtained from hisat2 into FASTA file. if you could suggest any other ...
written 10 months ago by saumya.sharma15090
0
votes
0
answers
416
views
0
answers
i want to convert .ht2 files into FASTA file
... Hey, I want to convert .ht2 files into FASTA file. as I have obtained .ht2 files from Hisat2 tool and now I need to convert these files into fasta format please help? these .hts2 files are obtained as I have indexed my reference genome. now, I am calling haplotypecaller from GATK tools for haplotyp ...
fasta gatk tool hisat2 written 10 months ago by saumya.sharma15090
0
votes
1
answer
326
views
1
answers
Comment: A: can we replace #N/a with 0 for using edgeR
... we have fpkm values and obtained it from NCBI geoset ...
written 13 months ago by saumya.sharma15090
4
votes
1
answer
326
views
1
answer
can we replace #N/a with 0 for using edgeR
... hey I want to know that can I replace #N/A with the 0.it is an RNAseq data and I want to do the differential expression analysis in edgeR. can I replace #N/A with 0 ...
R rna-seq written 13 months ago by saumya.sharma15090
0
votes
1
answer
697
views
1
answers
Comment: C: error while making a DEGList object on R using edgeR package
... thankyou is there any way to convert FPKM data into read counts? ...
written 13 months ago by saumya.sharma15090
2
votes
1
answer
697
views
1
answer
error while making a DEGList object on R using edgeR package
... hey, I am doing an RNAseq analysis.(using edgeR) I am loading my data for differential analysis, my data is of normalized gene expression(FPKM). I am now just trying to make DEGList object but, it is showing "NA counts not allowed". I have removed all NA from the data and there is no blank cell in m ...
rna-seq edger written 14 months ago by saumya.sharma15090 • updated 13 months ago by WouterDeCoster43k

Latest awards to saumya.sharma1509

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1047 users visited in the last hour