User: hektor102

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hektor1020
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Posts by hektor102

<prev • 13 results • page 1 of 2 • next >
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Answer: A: Progressive programming and multiple sequences alignment?
... Ok, I found. Dynamic programming is less effective because it has to use recurrence. It can only align two sequences, and the result is again computing with another seq. One method starts n times. It needs very powerful computers. ...
written 7 days ago by hektor1020
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Are there any other reference alingnment bases than Balibase?
... I need to do benchmarking of MSA tools. And I need another than Balibase reference DNA alignment DB. May someone heard about some? ...
alignment reference balibase databases written 7 days ago by hektor1020
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Progressive programming and multiple sequences alignment?
... Hello, I have a question, can someone explain to me why dynamic programming is not used in multiple sequences alignment? I found many info about dynamic programming, but it not explain the MSA problem. ...
alignment dynamic written 7 days ago by hektor1020
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recommended NGS data analysis courses?
... Hello! I'm looking for recommend training centre/company that runs NGS data analysis training in Europe. Can anyone recommend something? It's best that they be in English and take place before July. I care about something stationary, not online. ...
ngs course training written 12 days ago by hektor1020
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Comment: C: how to run mscore in bash?
... OK! I explained in edit :) ...
written 4 weeks ago by hektor1020
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how to run mscore in bash?
... Hi, I have another question with bash. In the folder, I have 400 result files. I want all result to compare with his reference file. My file structure looks like: resFileXXX.fasta XXX.afa resFileYYYYYY.fasta YYYYYY.afa resFileU.fasta U.afa I need to create script comparing ...
mscore aligment bash written 4 weeks ago by hektor1020
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Comment: C: Bash and seqret problem
... I'ts working, awesome! Thank U for help. I should definitely read about it ;) ...
written 4 weeks ago by hektor1020
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Bash and seqret problem
... Hi! This time I have a problem with bash. I'm working on Linux, but bash is unfamiliar to me. I need to change format clustal to fasta. Someone help me in another post, and I know I can do that with seqret. So now: i have in directory 40 files with ".aln" end. I can manually by terminal type ...
seqret script bash written 4 weeks ago by hektor1020
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Comment: C: Any script or program to change aln file into fasta?
... Thank u for an answer. I just downloaded and build emboss on my PC, can u give me an example of how to use it properly? I have file "a.aln" and I need it in ".fasta". I'm tried to read doc's but can't find it. EDIT: Ok i got it ! It's just "seqret" command ! Thank u so much for help! ...
written 4 weeks ago by hektor1020
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Any script or program to change aln file into fasta?
... Hello! I have a problem with format files. I need to compare the score from two alignments. One is in ".afa" format, second has ".aln" format (after t-coffee alignment). I have to use a mscore tool, but in command it requires two fasta files. ".afa" is ok, but how can i convert ".aln" to fasta? N ...
fasta aln format written 4 weeks ago by hektor1020 • updated 4 weeks ago by Jean-Karim Heriche18k

Latest awards to hektor102

Scholar 7 days ago, created an answer that has been accepted. For A: Progressive programming and multiple sequences alignment?

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