User: felipead66

gravatar for felipead66
felipead6670
Reputation:
70
Status:
Trusted
Location:
Last seen:
1 month, 3 weeks ago
Joined:
1 year, 9 months ago
Email:
f*********@gmail.com

Posts by felipead66

<prev • 42 results • page 1 of 5 • next >
0
votes
0
answers
114
views
0
answers
Implement blast on a database
... I am building a database linked to a webpage and I want to include blast searches. Do I have to use blast API for that? ...
database custom blast written 7 weeks ago by felipead6670
0
votes
0
answers
233
views
0
answers
Calculate enrichment factor from a list of GO terms
... I have a list of genes and the corresponding GO terms for a non-model organism. Could I calculate enrichment factor from the list of GO terms? ...
enrichment factor R go written 6 months ago by felipead6670
0
votes
0
answers
1.0k
views
0
answers
Comment: A: DeSeq2 error: counts matrix should be numeric, currently it has mode: character
... Write first the command on how you imported the data ...
written 6 months ago by felipead6670
0
votes
0
answers
146
views
0
answers
RNA Seq data distribution
... When I have RNA seq data, analyzed with DESEq2, is it necessary to do violin plots in order to check the distribution and intensities of the libraries? ...
libraries deseq2 rna seq distribution written 6 months ago by felipead6670
2
votes
0
answers
127
views
0
answers
Cannot find a gene in the counts table
... I have human rna-seq data and I use the tophat/samtools/htseq pipeline to produce the count table. My problem is that a particular gene, does not appear in the final count table, although it appears on the .gtf file. What could be the reason for that? Shouldn't all genes in the .gtf file appear in t ...
rna-seq written 7 months ago by felipead6670
1
vote
0
answers
454
views
0
answers
RNA seq library size
... I apologize for the silly question, but how do I find the library size of rna seq data if I have the count table? The count table was created using htseq. Is it just the sum of the counts of genes? ...
rnaseq counts written 10 months ago by felipead6670
0
votes
1
answer
221
views
1
answers
Comment: C: Linkage disequilibrium with one sample
... I thought so. Thank you very much for your answer. ...
written 11 months ago by felipead6670
2
votes
1
answer
221
views
1
answer
Linkage disequilibrium with one sample
... I have vcf files for various cultivars. Can I calculate linkage disequilibrium from a vcf file of only one cultivar or should I group them somehow? ...
ld plink19 written 11 months ago by felipead6670 • updated 11 months ago by chrchang5237.4k
0
votes
2
answers
608
views
2
answers
Answer: A: lumpy for cnv detection
... Thank you for your reply. Are you aware of any R packages that can process lumpy and svtyper output? ...
written 11 months ago by felipead6670
1
vote
2
answers
608
views
2
answers
lumpy for cnv detection
... I have 14 plant cultivars and I want to find cnvs against a wild type. I am using lumpy express for each cultivar separately and I get the corresponding .vcf file. My problem is that I do not know what to do next, how to proceed. Any ideas? ...
lumpy cnv written 11 months ago by felipead6670

Latest awards to felipead66

Appreciated 6 months ago, created a post with more than 5 votes. For VariantFiltration warning "undefined variable"
Popular Question 6 months ago, created a question with more than 1,000 views. For VariantFiltration warning "undefined variable"
Popular Question 14 months ago, created a question with more than 1,000 views. For Bio-DB-HTS installation and ensembl-vep
Student 14 months ago, asked a question with at least 3 up-votes. For VariantFiltration warning "undefined variable"

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1520 users visited in the last hour