User: Sakhaa

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Sakhaa0
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Posts by Sakhaa

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Analyzing VCF file
... Thank you very much for you comment @Pierre Lindenbaum, I have used the VRSQ, but how can I know or extract the FP only from vcf file, I need to Identify the number of alleles on each FP site, then Rank false positive calls by depth. ...
written 5 weeks ago by Sakhaa0
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Comment: A: Analyzing VCF file
... Thank you very much for you comment @Pierre Lindenbaum, I have used the VRSQ, but how can I know or extract the FP only from vcf file, I need to Identify the number of alleles on each FP site, then Rank false positive calls by depth. ...
written 5 weeks ago by Sakhaa0
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Analyzing VCF file
... Hello everyone, I am working on WGS workflows and I am beginner in that And I would like to know how can I rank false positive calls by depth in VCF file, which tool is useful to use and generate a plots? ...
genome sequence next-gen snp written 5 weeks ago by Sakhaa0
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How to convert g.vcf to .vcf file
... Hello everyone, I have *.g.vcf and I wont to convert it to *.vcf file, I have two questions, 1- what is the difference between the two files? 2- How we convert *.g.vcf to *.vcf ? or what is the line command that we use for that? Thank you ...
genome sequence alignment tool vcf written 5 months ago by Sakhaa0
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Comment: C: Question: Converting FASTQ to BAM by using Bowtie2
... Thank you very much @Istvan, I'm CS student and I'm a beginner in bioinformatics field, I want to ask some questions related to human reference, I have heard that a reference genome such as humans is generated by randomly choosing samples from a group of donors. But why do we call the DNA sequence g ...
written 6 months ago by Sakhaa0
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Question: Converting FASTQ to BAM by using Bowtie2
... Hello everyone, I'm working on DNA data and my task generates a pipeline VCF from Fastq file, with testing different read aliner tool and different VC tools. Now: I want to convert FASTQ to BAM by using Bowtie2 tools. I need an example to explain that step by step in a shell command. could you ...
genome alignment snp sequencing written 6 months ago by Sakhaa0 • updated 6 months ago by Istvan Albert ♦♦ 81k
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Extracting a special chromosome in fastq file
... Hello, I'm a beginner in bioinformatic filed and I want to extract chr.22 from the fastq file. I don't know which tool should I use. Could anyone help me in that? Thank you ...
genome alignment sequence gene sequencing written 7 months ago by Sakhaa0

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