User: Sakhaa

gravatar for Sakhaa
Sakhaa0
Reputation:
0
Status:
New User
Last seen:
7 months, 2 weeks ago
Joined:
1 year, 5 months ago
Email:
S*****@hotmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by Sakhaa

<prev • 8 results • page 1 of 1 • next >
0
votes
0
answers
132
views
0
answers
How to build my resource-bundle for variant recalibrator?
... Hello everyone, I have a specific data set and I want to use it as resource bundle to train my model. Could anyone guides me how can I prepare my data to fitted in variant recalibrator tool from gatk? Thank you very much! ...
resource bundle written 7 months ago by Sakhaa0
0
votes
1
answer
279
views
1
answers
Comment: C: Analyzing VCF file
... Thank you very much for you comment @Pierre Lindenbaum, I have used the VRSQ, but how can I know or extract the FP only from vcf file, I need to Identify the number of alleles on each FP site, then Rank false positive calls by depth. ...
written 11 months ago by Sakhaa0
0
votes
1
answer
279
views
1
answers
Comment: A: Analyzing VCF file
... Thank you very much for you comment @Pierre Lindenbaum, I have used the VRSQ, but how can I know or extract the FP only from vcf file, I need to Identify the number of alleles on each FP site, then Rank false positive calls by depth. ...
written 11 months ago by Sakhaa0
1
vote
1
answer
279
views
1
answer
Analyzing VCF file
... Hello everyone, I am working on WGS workflows and I am beginner in that And I would like to know how can I rank false positive calls by depth in VCF file, which tool is useful to use and generate a plots? ...
genome sequence next-gen snp written 11 months ago by Sakhaa0
0
votes
0
answers
933
views
0
answers
How to convert g.vcf to .vcf file
... Hello everyone, I have *.g.vcf and I wont to convert it to *.vcf file, I have two questions, 1- what is the difference between the two files? 2- How we convert *.g.vcf to *.vcf ? or what is the line command that we use for that? Thank you ...
genome sequence alignment tool vcf written 15 months ago by Sakhaa0
0
votes
1
answer
1.7k
views
1
answers
Comment: C: Question: Converting FASTQ to BAM by using Bowtie2
... Thank you very much @Istvan, I'm CS student and I'm a beginner in bioinformatics field, I want to ask some questions related to human reference, I have heard that a reference genome such as humans is generated by randomly choosing samples from a group of donors. But why do we call the DNA sequence g ...
written 16 months ago by Sakhaa0
2
votes
1
answer
1.7k
views
1
answer
Question: Converting FASTQ to BAM by using Bowtie2
... Hello everyone, I'm working on DNA data and my task generates a pipeline VCF from Fastq file, with testing different read aliner tool and different VC tools. Now: I want to convert FASTQ to BAM by using Bowtie2 tools. I need an example to explain that step by step in a shell command. could you ...
genome alignment snp sequencing written 16 months ago by Sakhaa0 • updated 16 months ago by Istvan Albert ♦♦ 84k
5
votes
0
answers
862
views
0
answers
Extracting a special chromosome in fastq file
... Hello, I'm a beginner in bioinformatic filed and I want to extract chr.22 from the fastq file. I don't know which tool should I use. Could anyone help me in that? Thank you ...
genome alignment sequence gene sequencing written 17 months ago by Sakhaa0

Latest awards to Sakhaa

Popular Question 10 months ago, created a question with more than 1,000 views. For Question: Converting FASTQ to BAM by using Bowtie2

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1516 users visited in the last hour