User: nc52

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nc5210
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4 months ago
Joined:
8 months, 3 weeks ago
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n***@st-andrews.ac.uk

Posts by nc52

<prev • 8 results • page 1 of 1 • next >
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Comment: A: SRA Toolkit fastq-dump error
... Did you ever get an answer to this? I am having the same problem. ...
written 4 months ago by nc5210
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OMA standalone has not listed splice variants used
... Hi there, This is just a small question I hope! My OMA run has completed and I appear to have all of the files I am supposed to have in the Output directory bar one: used_splicing_variants.txt. I specified in parameters.drw "UseOnlyOneSplicingVariant := true;" and provided the splicing informatio ...
oma written 6 months ago by nc5210 • updated 6 months ago by adrian.altenhoff620
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Comment: C: OMA error in reading the all-against-all files
... Hi Adrian, Sorry had to go to the lab. I issued the find command exactly as above and nothing was displayed in the terminal.... I dont know what that means. Also, I relaunched OMA from the same directory without changing anything and it doesnt seem to be working very well. 1) The first produced ...
written 7 months ago by nc5210
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Comment: C: OMA error in reading the all-against-all files
... Hi Adrian, Thanks for your quick reply. I have checked the cache and Cache/AllAll/Dimm_proteins_A/Dimm_proteins_A/part_78-177.gz does not exist. The files that OMA is generating are stored in my own directory so they should not be purged by any automated process. I am not sure about jobs on the c ...
written 7 months ago by nc5210
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OMA error in reading the all-against-all files
... Hi there, I am having a problem with OMA not being able to read files. The error message is: **** Reading the all-against-all files... Error, ' unable to ReadProgram(Cache/AllAll/Dimm_proteins_A/Dimm_proteins_A/part_78-177)' Its no surprise that it can't read it because I checke ...
oma written 7 months ago by nc5210 • updated 7 months ago by adrian.altenhoff620
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Comment: C: OMA error - download from gene ontology not working 404
... Dear Christophe, It seems as though I spoke too soon! We are now getting the following error: Starting database conversion and checks... Process 64271 on marvin: job nr 1 of 100 Reading GO file... Ontologies read: 47360 Error, (in ConvertRawFile) Darwin cannot open file /root/.oma/GOdata.drw-2019 ...
written 8 months ago by nc5210
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Comment: C: OMA error - download from gene ontology not working 404
... Thank you very much for the prompt reply and fix! Seems to be working :D Much appreciated! ...
written 8 months ago by nc5210
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OMA error - download from gene ontology not working 404
... Hi there, Wondering if anyone can help with an OMA error I am having. It seems that OMA cannot access the file it requires from www.geneontology.org/ontology/gene_ontology.obo. This is the error message: Starting database conversion and checks... Process 38697 on marvin: job nr 1 of 100 ...
orthologs oma written 8 months ago by nc5210 • updated 8 months ago by Christophe Dessimoz590

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