User: flogin

gravatar for flogin
flogin150
Reputation:
150
Status:
Trusted
Location:
FioCruz/Brazil
Twitter:
@dezordi_fz
Last seen:
5 days, 5 hours ago
Joined:
6 months, 4 weeks ago
Email:
z************@gmail.com

Currently, I'm a Master's Degree student in Biosciences and Biotechnology in Health.

Posts by flogin

<prev • 62 results • page 1 of 7 • next >
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Comment: C: Inserting bash and bioinformatic's scripts into browser database
... Nice, but can I create an interactive ambient between my database and galaxy? ...
written 6 days ago by flogin150
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Inserting bash and bioinformatic's scripts into browser database
... Hello everyone, I'm reading about database creation, and I didn't find a good material for one question (probably because I make the wrong questions). My question is: If I want to put algorithms and scripts inside a MySQL database implement in Java and HTML how I can do this? for example: to creat ...
python java browser script bash written 6 days ago by flogin150
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Comment: C: Running blast command line inside python script
... Yeah, this is a good way, but I was using an institutional server with python 3.5 :/ ...
written 22 days ago by flogin150
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Comment: C: Running blast command line inside python script
... Thanks for the advice, I rewrite my code, but now this message error appears: [blastall] ERROR: Arguments must start with '-' (the offending argument #6 was: '0.01') ...
written 22 days ago by flogin150
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Running blast command line inside python script
... Hello guys, I'm writing a python script to automatize several analysis that I need to do, one of those are BLAST analyses, so, in this way I create these structure, where the user put the file with queries and the number of threads, but when I try to run, an error message appears: [blastall] ERROR: ...
python pipeline blast written 24 days ago by flogin150 • updated 24 days ago by Mensur Dlakic1.2k
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Comment: C: Working with redundant information on BLAST output
... I think that groupby maybe don't be applied to my problem, because, following the guide from pydata.org, the filter work in 2 ways: Discard data that belongs to groups with only a few members or Filter out data based on the group sum or mean. And I want to make interactive comparisons between severa ...
written 8 weeks ago by flogin150
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Comment: C: Working with redundant information on BLAST output
... So.. I work now with pandas and with all columns of BLAST output. import pandas as pd header_outfmt6 = ['qseqid','sseqid','pident','length','mismatch','gapopen','qstart','qend','sstart','send','evalue','bitscore'] df = pd.read_csv('blast_brute.txt', sep='\t',header = None,names = header ...
written 8 weeks ago by flogin150
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Comment: C: Working with redundant information on BLAST output
... Thanks Sej, I'm gonna check this! ...
written 8 weeks ago by flogin150
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Working with redundant information on BLAST output
... Hi guys, Currently I'm working with a lot of BLASTn analysis, I have an output in tabular format (argument -outfmt 6) with more than 170 thousand lines. In that link: https://textuploader.com/11krp has an example with pieces of information that I want: query, subject, subject start, subject end and ...
filter python blast dictionary written 8 weeks ago by flogin150
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Answer: A: How to check the expression of a gene using the sequence of that gene?
... " Do I need to use the whole sequence or only the identical regions sequence?" It depends, if you want check if that region is expressed, you can use only the sequence of 750 pb (mapping with BowTie2, for example), but, if you want to evaluate the expression levels, you need to make a whole genome ...
written 10 weeks ago by flogin150

Latest awards to flogin

Scholar 8 weeks ago, created an answer that has been accepted. For A: Prottest output to Raxml input
Scholar 10 weeks ago, created an answer that has been accepted. For A: Prottest output to Raxml input
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Prottest output to Raxml input
Supporter 3 months ago, voted at least 25 times.
Autobiographer 5 months ago, has more than 80 characters in the information field of the user's profile.

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