User: flogin

gravatar for flogin
flogin150
Reputation:
150
Status:
Trusted
Location:
FioCruz/Brazil
Twitter:
@dezordi_fz
Last seen:
5 days, 18 hours ago
Joined:
9 months, 3 weeks ago
Email:
z************@gmail.com

Currently, I'm a Master's Degree student in Biosciences and Biotechnology in Health.

Posts by flogin

<prev • 70 results • page 1 of 7 • next >
0
votes
0
answers
101
views
0
answers
Comment: C: accessing ncbi nucleotide section with python
... thanks vkkodali, I put in this form to recovery the taxonomic levels that I want: for x in record_host_tax[0]["LineageEx"]: if 'phylum' in x.values(): phylum = x['ScientificName'] if 'class' in x.values(): classe = x['ScientificName'] if 'order' i ...
written 6 days ago by flogin150
0
votes
0
answers
101
views
0
answers
Comment: C: accessing ncbi nucleotide section with python
... Thanks vkkdali, I'm using this module now, everything is working well, but just a silly question: I'm using this code: handle = Entrez.efetch(db="Taxonomy",id='MG873553.1', retmode="xml") record = Entrez.read(handle) print(record[0]['LineageEx']) That returns: > [DictElement({'Ta ...
written 7 days ago by flogin150
1
vote
0
answers
101
views
0
answers
accessing ncbi nucleotide section with python
... I'm working in a little script to access NCBI nucleotides section with an ID list and recovery the information about host of each ID. So I write this: import requests as req link_nucleotide = 'https://www.ncbi.nlm.nih.gov/nuccore/' lst_terms = ['MG873553.1','MG873552.1','MG873551. ...
ncbi python match ids written 8 days ago by flogin150
0
votes
1
answer
69
views
1
answers
Comment: C: Can -num_alignments influence the outfmt 6 blast output format?
... Thanks genomax, I was reading and making some tests, the -num_alignments will show N alignments per HSPS between query-subject right? So can I combine -num_alignments 5 with -max_hsps 1, for example, to recovery only 5 lines per query? ...
written 18 days ago by flogin150
3
votes
1
answer
69
views
1
answer
Can -num_alignments influence the outfmt 6 blast output format?
... Hello guys, I was reading about the basic parameters of BLAST+, I used to set the parameters -outfmt 6 to return a tabular file as output with 12 columns. But I have one question about the parameter -num_aligments. If, for example, I set -num_aligments 5, in my tabular output only 5 lines per quer ...
parameters blast written 19 days ago by flogin150 • updated 19 days ago by genomax75k
0
votes
1
answer
165
views
1
answers
Comment: C: RPKM with bowtie output
... thanks swbarnes2, I'll check this. ...
written 5 weeks ago by flogin150
0
votes
1
answer
165
views
1
answers
Comment: C: RPKM with bowtie output
... It's a mapping of RNA-seq against a set of contigs, I just have the contigs, rna-seq files and bam files. ...
written 5 weeks ago by flogin150
6
votes
1
answer
165
views
6 follow
1
answer
RPKM with bowtie output
... Hello guys, There is a way to evaluate RPKM direct with bowtie 2 output (e.g. bam or sorted bam)? like an R package or some scripts to do this? ...
rpkm rna bowtie count written 5 weeks ago by flogin150 • updated 21 days ago by anoo0
0
votes
0
answers
117
views
0
answers
Comment: C: Inserting bash and bioinformatic's scripts into browser database
... Nice, but can I create an interactive ambient between my database and galaxy? ...
written 12 weeks ago by flogin150
0
votes
0
answers
117
views
0
answers
Inserting bash and bioinformatic's scripts into browser database
... Hello everyone, I'm reading about database creation, and I didn't find a good material for one question (probably because I make the wrong questions). My question is: If I want to put algorithms and scripts inside a MySQL database implement in Java and HTML how I can do this? for example: to creat ...
python java browser script bash written 12 weeks ago by flogin150

Latest awards to flogin

Scholar 4 months ago, created an answer that has been accepted. For A: Prottest output to Raxml input
Scholar 5 months ago, created an answer that has been accepted. For A: Prottest output to Raxml input
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Prottest output to Raxml input
Supporter 6 months ago, voted at least 25 times.
Autobiographer 8 months ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1748 users visited in the last hour