User: flogin

gravatar for flogin
flogin190
Reputation:
190
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@dezordi_fz
Last seen:
1 week, 1 day ago
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1 year, 1 month ago
Email:
z************@gmail.com

Currently, I'm a Master's Degree student in Biosciences and Biotechnology in Health.

Posts by flogin

<prev • 89 results • page 1 of 9 • next >
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Uncommon wget behavior with ncbi genomes
... Hey guys, I'm trying to download all genomes of Eimeria, present on NCBI. So, as usually, I wrote this line: wget -r --accept-regex ".*_genomic.fna.gz" "ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/protozoa/Eimeria*" -P . But, none file was returned (I tried with -A insetead of --accept-regex too ...
ncbi wget genomes written 14 days ago by flogin190 • updated 13 days ago by vkkodali1.9k
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Comment: C: subprocess time running
... Everything runs ok Joe, thanks for your support. Best, ...
written 15 days ago by flogin190
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Comment: C: subprocess time running
... I'm testing now, Idk of `x = subprocess.wait()` the correct syntax for python 3.5 or previous versions, but for python 3.6 shoud be: x = subprocess.Popen(GLAPD_SINGLE) x.wait() When my current analysis ends, I'll give the feedback, thanks Joe ! ...
written 15 days ago by flogin190
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subprocess time running
... Hey guys, I'm writting a python script to automatize a lot of tasks, one of this tasks is the use of GLAPD (a tool to desing primers of lamp (http://cgm.sjtu.edu.cn/GLAPD/)). So I have a list with the name of files that I want to use in the GLAPD, and use subprocess to execute GLAPD. #!/usr/bi ...
python subprocess written 15 days ago by flogin190
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Comment: C: A silly question about journal clubs
... Yeap, It's in that line, can you put here any article or tool that was developed by your community? during these hackathons* ...
written 27 days ago by flogin190
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Comment: C: A silly question about journal clubs
... It's a good point, our group have a team that works in the wet lab, so we have some datasets that came from the wet lab and professionals to test our computational hypothesis with traditional experiments. ...
written 29 days ago by flogin190
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Forum: A silly question about journal clubs
... Hey guys, sorry if this is not a properly computational problem, but I'm wondering about journal clubs in bioinformatics. It's common that many groups of researchers have journal clubs, a kind of meeting that the group discusses any paper or step of the group analysis. But I'm wondering if some gr ...
journal club forum challenge bioinformatics written 29 days ago by flogin190
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Comment: C: blast with python don't run
... It's works, thanks gb, I'm gonna study this structure 'stdout, stderr = cline()'. ...
written 10 weeks ago by flogin190
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blast with python don't run
... Hello guys, I'm studying how run a blast analysis with python, and I found the [Bio.Blast.Applications][1] my blast version is: Package: blast 2.6.0, build Jan 15 2017 17:12:27, and I write this code: import argparse from Bio.Blast.Applications import NcbiblastnCommandline from Bio.Blas ...
python blast written 10 weeks ago by flogin190 • updated 10 weeks ago by gb1.7k
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Comment: C: error to import NcbimakeblastdbCommandline
... Thanks, was really a version error :D ...
written 10 weeks ago by flogin190

Latest awards to flogin

Popular Question 13 days ago, created a question with more than 1,000 views. For Change mean color in seaborn
Scholar 8 months ago, created an answer that has been accepted. For A: Prottest output to Raxml input
Scholar 9 months ago, created an answer that has been accepted. For A: Prottest output to Raxml input
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Prottest output to Raxml input
Supporter 10 months ago, voted at least 25 times.
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