Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: tuj92050

gravatar for tuj92050
tuj92050 • 0
Reputation:
0
Status:
New User
Last seen:
6 days, 4 hours ago
Joined:
1 year, 3 months ago
Email:
t*******@temple.edu

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by tuj92050

<prev • 6 results • page 1 of 1 • next >
0
votes
0
answers
45
views
0
answers
Trying to use PAML to reconstruct ancestral sequences, but the output file is blank
... I have a tree file and a protein phylip file and I'm looking to reconstruct the ancestral sequences at each node of the tree. I'm editing the control file the same way the user manual specifies to reconstruct ancestral sequences, and PAML runs on my data, but when I open the rst file to view the rec ...
paml written 6 days ago by tuj92050 • 0
0
votes
0
answers
380
views
0
answers
Comment: C: Seeing only "N's" in tablet genome viewer?
... How would I know that it actually has alignments in it? ...
written 15 months ago by tuj92050 • 0
0
votes
0
answers
380
views
0
answers
Comment: C: Seeing only "N's" in tablet genome viewer?
... yes, the bai file is in the same directory ...
written 15 months ago by tuj92050 • 0
1
vote
0
answers
380
views
0
answers
Seeing only "N's" in tablet genome viewer?
... I downloaded a bam file of an exome sequence from the 1000 genome project website and ran samtools view to extract chromosome 22. My command was samtools view -b NA20515.bam 22 > chr22.bam I received the message `random alignment retrieval only works for indexed BAM or CRAM files` but it s ...
genome viewer bam written 15 months ago by tuj92050 • 0
0
votes
0
answers
1.3k
views
0
answers
Comment: C: Extracting a chromosome from an indexed bam file?
... I just tried that and I got the error "random alignment retrieval only works for indexed BAM or CRAM files" ...
written 15 months ago by tuj92050 • 0
2
votes
0
answers
1.3k
views
0
answers
Extracting a chromosome from an indexed bam file?
... This is for a course I am currently taking. I have downloaded an indexed bam file (.bai) of all the exome reads from thr 1000 genomes project. The next step in this assignment is extracting the reads for chromosome 22 of this file. I tried samtools to do this samtools view -b NA20515.bam.bai c ...
bam samtools chromosome written 15 months ago by tuj92050 • 0

Latest awards to tuj92050

Popular Question 15 months ago, created a question with more than 1,000 views. For Extracting a chromosome from an indexed bam file?
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1356 users visited in the last hour