User: tuj92050

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tuj920500
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Posts by tuj92050

<prev • 6 results • page 1 of 1 • next >
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Trying to use PAML to reconstruct ancestral sequences, but the output file is blank
... I have a tree file and a protein phylip file and I'm looking to reconstruct the ancestral sequences at each node of the tree. I'm editing the control file the same way the user manual specifies to reconstruct ancestral sequences, and PAML runs on my data, but when I open the rst file to view the rec ...
paml written 6 days ago by tuj920500
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Comment: C: Seeing only "N's" in tablet genome viewer?
... How would I know that it actually has alignments in it? ...
written 15 months ago by tuj920500
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Comment: C: Seeing only "N's" in tablet genome viewer?
... yes, the bai file is in the same directory ...
written 15 months ago by tuj920500
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Seeing only "N's" in tablet genome viewer?
... I downloaded a bam file of an exome sequence from the 1000 genome project website and ran samtools view to extract chromosome 22. My command was samtools view -b NA20515.bam 22 > chr22.bam I received the message `random alignment retrieval only works for indexed BAM or CRAM files` but it s ...
genome viewer bam written 15 months ago by tuj920500
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Comment: C: Extracting a chromosome from an indexed bam file?
... I just tried that and I got the error "random alignment retrieval only works for indexed BAM or CRAM files" ...
written 15 months ago by tuj920500
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Extracting a chromosome from an indexed bam file?
... This is for a course I am currently taking. I have downloaded an indexed bam file (.bai) of all the exome reads from thr 1000 genomes project. The next step in this assignment is extracting the reads for chromosome 22 of this file. I tried samtools to do this samtools view -b NA20515.bam.bai c ...
bam samtools chromosome written 15 months ago by tuj920500

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Popular Question 15 months ago, created a question with more than 1,000 views. For Extracting a chromosome from an indexed bam file?

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