User: tuj92050
tuj92050 • 0
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Posts by tuj92050
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... I have a tree file and a protein phylip file and I'm looking to reconstruct the ancestral sequences at each node of the tree. I'm editing the control file the same way the user manual specifies to reconstruct ancestral sequences, and PAML runs on my data, but when I open the rst file to view the rec ...
written 8 months ago by
tuj92050 • 0
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... How would I know that it actually has alignments in it? ...
written 23 months ago by
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... yes, the bai file is in the same directory ...
written 23 months ago by
tuj92050 • 0
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... I downloaded a bam file of an exome sequence from the 1000 genome project website and ran samtools view to extract chromosome 22. My command was
samtools view -b NA20515.bam 22 > chr22.bam
I received the message `random alignment retrieval only works for indexed BAM or CRAM files` but it s ...
written 23 months ago by
tuj92050 • 0
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... I just tried that and I got the error "random alignment retrieval only works for indexed BAM or CRAM files" ...
written 23 months ago by
tuj92050 • 0
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... This is for a course I am currently taking. I have downloaded an indexed bam file (.bai) of all the exome reads from thr 1000 genomes project. The next step in this assignment is extracting the reads for chromosome 22 of this file. I tried samtools to do this
samtools view -b NA20515.bam.bai c ...
written 23 months ago by
tuj92050 • 0
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