User: evelyn

gravatar for evelyn
evelyn20
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Last seen:
39 minutes ago
Joined:
2 months, 3 weeks ago
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g****************@gmail.com

Posts by evelyn

<prev • 15 results • page 1 of 2 • next >
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Variant calling using GATK
... I am using `GATK` for variant calling. It works and give results but the number of SNPs found is significantly very low as compared to `samtools`. Is this fine or there is an error? ...
snp written 1 day ago by evelyn20
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Comment: C: R Studio memory on Mac
... I am trying to use them for `Upset` R plot and these are not compressed. ...
written 6 days ago by evelyn20
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Comment: C: R Studio memory on Mac
... These are `vcf` files. ...
written 6 days ago by evelyn20
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Comment: C: UpSet Plot R for more than five datasets
... The working code for `UpSet` R plot for `vcf` files is: rm(list = ls()) library(UpSetR) library(vcfR) set1 <- read.vcfR("Set1.vcf") set2 <- read.vcfR("Set2.vcf") set3 <- read.vcfR("Set3.vcf") set4 <- read.vcfR("Set4.vcf") set5 <- read.vcfR("Set ...
written 6 days ago by evelyn20
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Comment: C: R Studio memory on Mac
... My Mac has 16 GB memory. ...
written 6 days ago by evelyn20
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R Studio memory on Mac
... I am trying to import three really big files (each file size >100GB) to R Studio but it complains of memory. I am using this `version`: platform x86_64-apple-darwin15.6.0 arch x86_64 os darwin15.6.0 system ...
R written 6 days ago by evelyn20
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Comment: C: UpSet Plot R for more than five datasets
... It worked, thank you! ...
written 7 days ago by evelyn20
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UpSet Plot R for more than five datasets
... I am trying to make UpSetR plot for nine vcf files using [working code][1]. However, the output plot shows only five files out of total nine files. [1]: https://www.biostars.org/p/379679/#379721 ...
R snp written 7 days ago by evelyn20 • updated 7 days ago by SMK320
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Comment: C: upSet R plot for variant calling
... I tried to use the same codes for six vcf files but it shows the plot for five files only. ...
written 7 days ago by evelyn20
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Comment: C: upSet R plot for variant calling
... It worked. I got same results as of vcf-compare. Thank you! ...
written 8 days ago by evelyn20

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