User: eggerj

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eggerj0
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Posts by eggerj

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Removing Unknown Batch Effects and Latent Confounders in Splicing PSI Data
... Hi everyone, I'd really appreciate some input on this: I'm working with alternative splicing event expression data in AML (very heterogeneous). Unlike gene expression, splicing events are quantified using percent spliced in (PSI) which represents the relative inclusion of an exon to the total gen ...
sva differential expression splicing rna-seq limma written 5 days ago by eggerj0 • updated 5 days ago by geek_y11k
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Comment: C: Normalise batch effects for Percent Spliced In (PSI) matrice
... Any luck with this? I have PSI values as well, although they are all between 0 and 1. I need a way to estimate any number of unknown batch effects and produce a batch-corrected PSI matrix. ...
written 7 weeks ago by eggerj0

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