User: Chat-ra

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Chat-ra20
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1 year, 2 months ago
Joined:
1 year, 6 months ago
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s************@u-psud.fr

Posts by Chat-ra

<prev • 14 results • page 1 of 2 • next >
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Comment: C: The distance in nucleotide between two genes on different strands
... Thank you very much for your response ! I'm looking for the "genomic" distance ! ...
written 16 months ago by Chat-ra20
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The distance in nucleotide between two genes on different strands
... Hello! I’ve a silly question concerning the way of calculating the distance between genes on the same chromosome but on different strand. I’ve retrieved the genes position from Ensembl. For example I’ve would like to calculate the distance between: - GAS6 Start-113820549 End-113864076 revers ...
genome written 16 months ago by Chat-ra20 • updated 16 months ago by geek_y11k
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Comment: C: Convert hg19 coordinates to hg38 coordinates
... I don't think that i've explain correctly my problem. I've only one coordinate (in this example : 23 195 610) that is in the middle on the gene. I can't seem to use Liftover with only one coordinate ...
written 17 months ago by Chat-ra20
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Convert hg19 coordinates to hg38 coordinates
... Hello everyone! I would like to convert hg19 coordinates to hg38 coordinates. The problem is that I don’t really have much informations in order to do so. For example: The gene KLHL7 in hg19 the start is 23 145 353 and the end is 23 217 533. In hg38 the start is 23 105 758 and the end is 23 177 ...
assembly written 17 months ago by Chat-ra20 • updated 17 months ago by Pierre Lindenbaum130k
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Domain Prediction Tools for Windows
... Hello everyone! I would like to use InterProScan but I’m working on a Windows so I can’t use it. Is there an alternative to InterproScan that I can use on Windows? Thank you for any suggestions!!! ...
alignment written 17 months ago by Chat-ra20
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Comment: C: Panther Database: how to find start and end position of a Panther ID?
... Okey thank you for your help ! ...
written 17 months ago by Chat-ra20
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Comment: C: Panther Database: how to find start and end position of a Panther ID?
... I would like to retrieve this information from the Panther database and not a another source in order to assure the validity of the information. I'm sorry if it wasn't clear! ...
written 17 months ago by Chat-ra20
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Comment: C: Panther Database: how to find start and end position of a Panther ID?
... I'm looking to find the start/stop of where the panther domains map on the protein ...
written 17 months ago by Chat-ra20
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Panther Database: how to find start and end position of a Panther ID?
... Hello everyone! I’ve downloaded a file from the Ensembl Biomart here : https://www.ensembl.org/biomart/martview/4cab87e631cda01b9def14f09cc2021f The chosen database is: “Ensembl Genes 95” and the chosen dataset is “Human Genes (GRCh38.p12)” The chosen attributes are: - Gene stable ID - Transcrip ...
genome written 17 months ago by Chat-ra20
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Comment: C: Ensembl Biomart : One Ensembl transcript ID for several UniprotKB ID
... In case someone has the same question here is the response from the HGNC help desk : "Currently NCBI represent MICAL2 and MICALCL as two separate adjacent genes, see https://www.ncbi.nlm.nih.gov/gene/9645 and https://www.ncbi.nlm.nih.gov/gene/84953 However the GENCODE annotation shown in Ensembl ...
written 18 months ago by Chat-ra20

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