User: Leon

gravatar for Leon
Leon50
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Website:
https://n-damo.github.io/
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2 days, 2 hours ago
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1 month, 2 weeks ago
Email:
2*************@stu.xmu.edu.cn

Posts by Leon

<prev • 6 results • page 1 of 1 • next >
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how to get Z-score without normal samples as control group in nipt(Non-invasive prenatal testing)
... Hi, i have a cfDNA sequencing data of a pregnant woman, i want to test the existence of trisomy or not. However, it is not possible to get Z-score value of the sample without a set of normal samples as control group. I think this will be a very useful question for people like me meeting such questi ...
next-gen written 4 weeks ago by Leon50
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Comment: C: Y-DNA and mtDNA Haplogroup Predictor
... I have no experience with the method about MToolBox myself. ...
written 4 weeks ago by Leon50
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Comment: C: Y-DNA and mtDNA Haplogroup Predictor
... if you want to use vcf file as software input, for mtDNA, I think haplogrep is the most popular classifier . However, as I know, there is no available tool to predict Y haplogroup when you provide vcf file containing snps information as input. As a suggestion, you can get haplogroup dict in ISOGG w ...
written 4 weeks ago by Leon50
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Answer: A: Correct GC bias using read counts and Loess regression method
... # Get 300kb bin window: `bedtools makewindows -g hg38.chrom.size -w 300000 > hg38_300.bed` ## hg38.chrom.size like this: chr13 114364328 chr18 80373285 chr21 46709983 # Get gc content `bedtools nuc -fi hs38DH.fa -bed hg38_300.bed | cut -f 1-3,5 > 300.gc.bed` # Get depth in each ...
written 5 weeks ago by Leon50
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Answer: A: Y Chromosome Haplotype Inference
... the link maybe help https://www.biostars.org/p/328350/#367934 ...
written 6 weeks ago by Leon50
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Answer: A: Y-DNA and mtDNA Haplogroup Predictor
... https://github.com/N-damo/ypredict-master, the software is under development. ...
written 7 weeks ago by Leon50

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