User: Leon

gravatar for Leon
Leon100
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100
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Website:
https://n-damo.github.io/
Last seen:
3 days, 21 hours ago
Joined:
6 months, 2 weeks ago
Email:
2*************@stu.xmu.edu.cn

Posts by Leon

<prev • 18 results • page 1 of 2 • next >
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Comment: C: calculate enrichment efficiency using CollectHsMetrics
... enrichment efficiency = Number PF(passing filter) reads mapping to targets/Total number of PF reads mapping to the reference ...
written 29 days ago by Leon100
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calculate enrichment efficiency using CollectHsMetrics
... CollectHsMetrics Hi, I wanna calculate enrichment efficiency using Picard CollectHsMetrics, however I do not know which items correspond to enrichment efficiency. The command is `gatk CollectHsMetrics -I dedup.bam -O hs_metrics.txt -BI list.interval_list -TI list.interval_list -R hs38DH.fa ` I am ...
gatk exom sequencing written 29 days ago by Leon100
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Comment: C: 1000 genome copy number variation
... This is really helpful. Thank you! ...
written 10 weeks ago by Leon100
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1000 genome copy number variation
... I am testing the performance of some cnv detecting tools based on read depth using exome sequencing. For achieving this task, I need gold standard dataset as benchmark.Where can I find these data from 1000 genome project or other project? Thank you. ...
exome 1000 genome cnv written 10 weeks ago by Leon100 • updated 10 weeks ago by Kevin Blighe48k
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Paternity Testing using clinical exome sequencing
... As the title, I have a vcf file calling from a clinical exome sequcing, which contains three samples(e.g child,father,mother). I am just thinking how to do paternity testing using this calling result. It is very important for pedigree sample analysis, any suggestions will be helpful to me.Thank you ...
exome sequencing written 11 weeks ago by Leon100
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Answer: A: Apply beagle5.0 to make imputation and phasing under CentOS and PBS
... basic tutorial detail pipeline step-by-step attached in ...
written 3 months ago by Leon100
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Comment: C: inherited cancer gene
... any web site can provide such genes? ...
written 3 months ago by Leon100
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inherited cancer gene
... Hello, I wanna design a panel to detect inherited caner(e.g inherited breast cancer) gene variation, but I have no idea about how to find these relatived genes. Any suggestion will be appreciated. Thank you ...
cancer wes written 3 months ago by Leon100
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Comment: C: How to analyse single reads (not paired-end) for 16S diversity study
... as a suggestion, you can use seqtk mergepe to merge fq1 and fq2.`Usage: seqtk mergepe `. Then,use trimmomatic to trim adapter and dirty sequence using single read mode.. ...
written 3 months ago by Leon100
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Comment: C: Convert the genotype format from numeric to letters
... [vcf format].It is useful. ...
written 4 months ago by Leon100

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