User: jflopezfernandez
jflopezfernandez • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- Twitter:
- @JFloppyz
- Last seen:
- 16 hours ago
- Joined:
- 1 week, 5 days ago
- Email:
- j***************@gmail.com
The only thing I know about Biology is that DNA exists, but I love writing parsers in C and C++, and came across this site looking for a cool new project to take on. I'm excited to learn about this field that a week ago I had no idea even existed.
Posts by jflopezfernandez
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... Hey, glad to hear you figured it out. If I can offer a pointer or two, by convention you probably want your folders at 755 and files at 644. A 755 means that everyone can read and write to the directories, but only you have write access. A 644 for your files means that everyone has read access, but ...
written 16 hours ago by
jflopezfernandez • 10
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... Try using ls -a to show hidden files as well. ...
written 7 days ago by
jflopezfernandez • 10
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... Remember that a regular expression is written as /something/, so your regex doesn't make sense. You can either split them up into their own individual regex like this:
sed -n -e '/avrbs3/p;/avrbs2/p;/xop/p' ./file'
or, more logically in this case, simply group the strings with parentheses and ...
written 12 days ago by
jflopezfernandez • 10
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... Oh, I thought you only needed to get it the first time. If you need to keep matching it over and over, you can do that a few different ways. You can use Dr. Dondrup's method, just simply take out the second part where you pipe to 'head', you can use my method without calling exit, or you can use sed ...
written 12 days ago by
jflopezfernandez • 10
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Comment:
C: hisat2-align exited with value 1
... Here is the source file for the program; this is hisat2.cpp. ![Notice that this is the error message you are getting.][1] To find your error, we just have to go back up a little. ![enter image description here][2]
You can see here that the function is dealing with this IO error (getting too many ar ...
written 12 days ago by
jflopezfernandez • 10
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... Can you post your code? ...
written 12 days ago by
jflopezfernandez • 10
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Comment:
C: Top hit from phmmer
... Are you just looking for the longest substring in the sequence on each iteration? ...
written 12 days ago by
jflopezfernandez • 10
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Comment:
C: hisat2-align exited with value 1
... Wow, that's actually really cool, I didn't know that, thanks for the heads up ...
written 12 days ago by
jflopezfernandez • 10
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... So, there's a lot going on here. Let me preface my this by saying that I am not a biologist in any way shape or form; I'm a compiler writer who found this site by accident; keep in mind that I'm commenting only on what the documentation says the program is supposed to do and the code you typed, and ...
written 12 days ago by
jflopezfernandez • 10
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... I did not for a second consider that exiting right away meant the end of the pipe, wow, you are absolutely right; my Windows roots have betrayed me ...
written 12 days ago by
jflopezfernandez • 10
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