User: caranlove

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Posts by caranlove

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Comment: C: BWA error when aligning multiple files
... Thank you. Do you know why this might be? Or how to move forward with this being the case? ...
written 11 days ago by caranlove0
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BWA error when aligning multiple files
... I am using BWA to align reads which have been filtered through stacks to reference files using a script similar to that below: set -ueo pipefail FILES="M17 M526 M954 LG11 LG204 LG309 LG110 M224 M236 M527 M955 LG12 LG229 LG310 " i=1 ...
software error alignment written 11 days ago by caranlove0 • updated 11 days ago by h.mon24k
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Issues creating loop for BWA job
... Hi, I am having issues creating a successful loop for processing ~200 files in the same directory. My BWA script runs successfully when run on individual scripts but I have been unsuccessful in creating a working loop that will process all files, not just one at a time. Below is an example script: ...
software error alignment snp written 11 days ago by caranlove0 • updated 11 days ago by genomax64k

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