User: shenli.sam
shenli.sam • 180
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Posts by shenli.sam
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... A bioinformatician position is open in Dr. Shen’s group at the Icahn School of Medicine at Mount Sinai in New York City. This is a permanent staff position. Consequently you’ll enjoy the full benefits as a Mount Sinai employee. Our research mainly focuses on bioinformatic analysis of transcriptomic ...
written 3 months ago by
shenli.sam • 180
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... Yes. The position is still open. ...
written 3 months ago by
shenli.sam • 180
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... A bioinformatician position is open in Dr. Shen’s group at the Icahn School of Medicine at Mount Sinai in New York City. This is a permanent staff position. Consequently you’ll enjoy the full benefits as a Mount Sinai employee. Our research mainly focuses on bioinformatic analysis of transcriptomic ...
written 4 months ago by
shenli.sam • 180
• updated
4 months ago by
genomax ♦ 33k
1
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... As of today, the position is still open. Interested persons please send your resume. ...
written 5 months ago by
shenli.sam • 180
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... A bioinformatician position is open in Dr. Shen’s group at the Icahn School of Medicine at Mount Sinai in New York City. This is a permanent staff position. Consequently you’ll enjoy the full benefits as a Mount Sinai employee. Our research mainly focuses on bioinformatic analysis of transcriptomic ...
written 8 months ago by
shenli.sam • 180
3
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776
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... A bioinformatician position is open in Dr. Shen’s group at the Icahn School of Medicine at Mount Sinai in New York City. This is a permanent staff position. Consequently you’ll enjoy the full benefits as a Mount Sinai employee. Our research mainly focuses on bioinformatic analysis of transcriptomic ...
written 12 months ago by
shenli.sam • 180
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... Dear Honey, I'm sorry that you are having this trouble. We do have a local instance of ngs.plot at Mt. Sinai but it is really difficult to make it public due to school policy. ngs.plot is more actively being developed as a command line tool. The Galaxy version is kind of outdated. If you don't mind ...
written 4.2 years ago by
shenli.sam • 180
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... Normalization by sequencing depth (i.e. total read count) is probably the simplest approach but is widely used. There are some drawbacks with this approach. For example, if the signal-to-noise ratio is very different between two libraries, one library is going to contain more background reads than t ...
written 4.2 years ago by
shenli.sam • 180
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... Have you calculated coverage for your bisulfite-seq data? If yes, IGV can certainly draw a plot like that.
If you want global visualization for your ChIP-seq at functional genomic regions, consider ngs.plot. It generate beautiful figures in vector-based format, which can be loaded into an image ed ...
written 4.2 years ago by
shenli.sam • 180
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... You can use diffReps. It is an automated pipeline for ChIP-seq differential analysis. Since you don't have replicates, you can choose G-test (recommended) or Chi-square test. diffReps has implemented them all.
...
written 4.3 years ago by
shenli.sam • 180
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4.2 years ago,
created an answer with at least 3 up-votes.
For A: Differential Peaks Between Replicates
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