User: shenli.sam

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shenli.sam180
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Posts by shenli.sam

<prev • 14 results • page 1 of 2 • next >
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Job: Looking for a bioinformatician in NGS analysis
... A bioinformatician position is open in Dr. Shen’s group at the Icahn School of Medicine at Mount Sinai in New York City. This is a permanent staff position. Consequently you’ll enjoy the full benefits as a Mount Sinai employee. Our research mainly focuses on bioinformatic analysis of transcriptomic ...
python chip-seq job R ngs rna-seq written 5 months ago by shenli.sam180
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Comment: C: Looking for a bioinformatician to work on NGS analysis in epigenomics, Ican Scol
... Yes. The position is still open. ...
written 5 months ago by shenli.sam180
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Job: Looking for Bioinformatician in NGS analysis, Icahn School of Medicine at Mount Sinai, New York, NY, USA
... A bioinformatician position is open in Dr. Shen’s group at the Icahn School of Medicine at Mount Sinai in New York City. This is a permanent staff position. Consequently you’ll enjoy the full benefits as a Mount Sinai employee. Our research mainly focuses on bioinformatic analysis of transcriptomic ...
bioinformatics chip-seq job rna-seq written 6 months ago by shenli.sam180 • updated 6 months ago by genomax37k
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Comment: C: Looking for a bioinformatician to work on NGS analysis in epigenomics, Ican Scol
... As of today, the position is still open. Interested persons please send your resume. ...
written 7 months ago by shenli.sam180
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Job: Looking for a bioinformatician to work on NGS analysis in epigenomics, Ican Scoll of Medicine at Mount Sinai, NY, USA
... A bioinformatician position is open in Dr. Shen’s group at the Icahn School of Medicine at Mount Sinai in New York City. This is a permanent staff position. Consequently you’ll enjoy the full benefits as a Mount Sinai employee. Our research mainly focuses on bioinformatic analysis of transcriptomic ...
chip-seq epigenomics ngs analysis rna-seq job written 10 months ago by shenli.sam180
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Job: Looking for a bioinformatician to work on NGS analysis in epigenomics (New York City)
... A bioinformatician position is open in Dr. Shen’s group at the Icahn School of Medicine at Mount Sinai in New York City. This is a permanent staff position. Consequently you’ll enjoy the full benefits as a Mount Sinai employee. Our research mainly focuses on bioinformatic analysis of transcriptomic ...
next-generation sequencing job bioinformatician written 14 months ago by shenli.sam180
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Comment: C: Looking For A Public Instance Of Galaxy That Has The "Ngs.Plot" Tool Installed
... Dear Honey, I'm sorry that you are having this trouble. We do have a local instance of ngs.plot at Mt. Sinai but it is really difficult to make it public due to school policy. ngs.plot is more actively being developed as a command line tool. The Galaxy version is kind of outdated. If you don't mind ...
written 4.4 years ago by shenli.sam180
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Answer: A: How To Do Normalization Of Two Chip-Seq Data?
... Normalization by sequencing depth (i.e. total read count) is probably the simplest approach but is widely used. There are some drawbacks with this approach. For example, if the signal-to-noise ratio is very different between two libraries, one library is going to contain more background reads than t ...
written 4.4 years ago by shenli.sam180
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Answer: A: Visualizing Chip-Seq And Bis-Seq (Dna Methylation) Data
... Have you calculated coverage for your bisulfite-seq data? If yes, IGV can certainly draw a plot like that. If you want global visualization for your ChIP-seq at functional genomic regions, consider ngs.plot. It generate beautiful figures in vector-based format, which can be loaded into an image ed ...
written 4.4 years ago by shenli.sam180
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Answer: A: Differential Histone Chip-Seq Analysis Without Replicates
... You can use diffReps. It is an automated pipeline for ChIP-seq differential analysis. Since you don't have replicates, you can choose G-test (recommended) or Chi-square test. diffReps has implemented them all. ...
written 4.4 years ago by shenli.sam180

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Teacher 4.4 years ago, created an answer with at least 3 up-votes. For A: Differential Peaks Between Replicates

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