User: microbez.uaf

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Posts by microbez.uaf

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invalid compressed data--crc error
... Hello everyone i am trying to unzip a file with the command " gunzip file_name.gz " and getting this error. gzip: invalid compressed data--crc error invalid compressed data--length error How can i unzip my files. ...
genome sequence sequencing written 6 months ago by microbez.uaf0 • updated 6 days ago by sppearce10
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Comment: C: Extracting specific ORFs from a complete metagenomic ORF file?
... Hye Collin, Thanks for your response. I have contigs and translated ORFs from those contigs (Approximately 900,000 contigs and 597500 translated ORFs) . I want to extract specific contigs/ORFs (1159) from those files. Can you help me in this regard. ...
written 7 months ago by microbez.uaf0
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Answer: A: Fastq Convert To Fasta
... Its probably late to reply but if anyone wondering about this issue they might use this simple command paste - - - - < file.fq | cut -f 1,2 | sed 's/^@/>/' | tr "\t" "\n" > file.fa ...
written 8 months ago by microbez.uaf0 • updated 14 days ago by RamRS24k
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Extracting specific ORFs from a complete metagenomic ORF file?
... I have a list of ORF (1159) that i want to extract from a complete metagenomic ORF file that contain 597500 ORF. Is there any tool or script with which i can do that. Or should i do this with assembled contigs, if yes then how can i extract those contgs/ORFs. I want to do blast with only 1159 ORF no ...
gene assembly sequencing written 8 months ago by microbez.uaf0 • updated 8 months ago by colindaven1.8k

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