User: Z.0121

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Z.01210
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Posts by Z.0121

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Download TCGA RNA-Seq Data: RSEM and RPKM
... I got the Transcriptome Profiling RNA Seq Data which named like this 2d6fc33e-c553-427e-9e1c-8008f694b0ce.htseq.counts; 5b39b3d7-2aa0-4dc8-b814-53e42fcc86fb.FPKM-UQ.txt;b142177f-f89e-4e5a-834b-a75e7ab0b618.FPKM.txt; 16c74720-66a9-4c6b-9450-3d12a28ca214.htseq.counts. Thank you in advance! ...
written 6 days ago by Z.01210
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Comment: C: Download TCGA RNA-Seq Data: RSEM and RPKM
... I have already tried to download the data from TCGA Data Portal but I don't know how to import that file to R? Do you have any suggestions? Thank you in advance! ...
written 6 days ago by Z.01210
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Comment: C: Download TCGA RNA-Seq Data: RSEM and RPKM
... Thank you so much for your help! ...
written 7 days ago by Z.01210
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Comment: C: Download TCGA RNA-Seq Data: RSEM and RPKM
... I wrote this code refer to this website. But it does not specify which argument are necessary for the the RSEM and RPKM with paired normal and tumor tissue. https://bioconductor.org/packages/release/bioc/vignettes/TCGAbiolinks/inst/doc/download_prepare.html#examples ...
written 7 days ago by Z.01210
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Comment: C: Download TCGA RNA-Seq Data: RSEM and RPKM
... For the RSEM and RPKM data with paired normal and tumor tissue, did I use the right command like below? Do I need any other filter? query.blca.trans.pro <- GDCquery(project = "TCGA-BLCA", data.category = "Transcriptome Profiling", ...
written 7 days ago by Z.01210
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Comment: C: Download TCGA RNA-Seq Data: RSEM and RPKM
... In addition, hope you can help to check whether it's right method I used to download the RSEM and RPKM with paired normal and tumor tissue. Thank you! query.blca.trans.pro <- GDCquery(project = "TCGA-BLCA", data.category = "Transcriptome Profiling", ...
written 7 days ago by Z.01210 • updated 7 days ago by Kevin Blighe39k
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Comment: C: Download TCGA RNA-Seq Data: RSEM and RPKM
... I have already use the TCGAbiolinks to download the data. But when I using the GDCprepare command, it comes a error like this: > GDCprepare(query.blca.trans.pro) Error in `[.data.frame`(query$results[[1]], query$results[[1]]$cases %in% : undefined columns selected Could you please tell me w ...
written 7 days ago by Z.01210
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Download TCGA RNA-Seq Data: RSEM and RPKM
... Hi, I am new in Bioinformatics. Could you guys tell me how to download TCGA-BLCA RNA SEQ RSEM and RPKM by using R or using the TCGA Data Portal or any other effective way? Thank you! ...
rna-seq written 7 days ago by Z.01210 • updated 7 days ago by genomax64k

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