User: eka0700

gravatar for eka0700
eka070030
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Location:
Bangladesh
Last seen:
5 years, 4 months ago
Joined:
7 years, 3 months ago
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e******@gmail.com

simple, love to learn

Posts by eka0700

<prev • 11 results • page 1 of 2 • next >
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PTM mapping in protein model
... Dear Biostars community, I have done homology modeling of a protein using swiss-model. Now i'm trying to map the predicted PTM sites in this model. How can i do it using Pymol? Waiting for your valuable suggestion... Thanks in advance...  ...
pymol homology modeling ptm mapping written 5.4 years ago by eka070030
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Answer: A: Prediction of Proteome disorder
... Thanks. I want to calculate the degree of intrinsic disorder in the complete proteome of 2 plants. but the server predict protein disorder for a single sequence or for a limited number of sequences. How can I calculate it for the whole proteome? ...
written 5.4 years ago by eka070030
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Prediction of Proteome disorder
... Hello everyone, I'm going with plant proteome & trying to predict disorder of those proteins. But I didn't find any server which can predict the disorder for whole proteome at a time. I've experienced RONN, PODDLE, MFDP2. Is it feasible for whole proteome? any other tool? If not then please giv ...
proteome disorder tool written 5.5 years ago by eka070030 • updated 2.9 years ago by Biostar ♦♦ 20
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Comment: C: Non-Redundant Data Sets Of Protein
... Is multiple sequence alignment required before using Jalview? ...
written 5.6 years ago by eka070030
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Comment: C: Non-Redundant Data Sets Of Protein
... Thanks. I've tried those. But it didn't work :( ...
written 5.6 years ago by eka070030
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Comment: C: Non-Redundant Data Sets Of Protein
... Yes, it is fasta. ...
written 5.6 years ago by eka070030
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Non-Redundant Data Sets Of Protein
... Hello everyone, I'm working with plant proteome. As there are huge number of proteins in a proteome, I want to filter out the protein number within a limited length of amino acids. Is there any tool available for this? And anyone for calculating the average length of amino acid sequences in plant p ...
written 5.6 years ago by eka070030 • updated 5.6 years ago by richard.rymer10
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Comment: C: Procheck Validation
... Thanks pappu. would you please share any literature that support this procedure? ...
written 7.3 years ago by eka070030
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Procheck Validation
... Dear all, I've done homology modeling of a protein. but in time of validation , procheck can't find or open the file. how can i overcome the problem? another problemm is here when i get the interactive ramchandran plot which shows several errors such as * Ramachandran plot: 96.5% core 2.3% allow 0.3 ...
plot written 7.3 years ago by eka070030 • updated 7.3 years ago by Pappu1.9k
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Homology Modeling
... dear all , I've done homology modeling of a protein using modweb and hhpred .now , how can i do energy minimization or identify the best model? i am about to start homology modeling. Thanks in advance. ...
written 7.3 years ago by eka070030 • updated 5.6 years ago by Biostar ♦♦ 20

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