User: archanaverma433

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Posts by archanaverma433

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Comment: C: fasta to fastq without quality scores
... I converted fastq file to fasta using the following command - seqtk seq -aQ64 sample1.fastq > sample1.fasta but in output - i am getting other words besides A, T , G, C- for example - W & R CACACWCAACCCAGGTATGCATGCACATGCACGTCCATCTGCACACTCAACCCAAGCATGTGCACACACRCACACTTGTACACACACACTCAACCCAAG ...
written 15 days ago by archanaverma4330
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Comment: C: fastqc: kmer-content failed
... How did you resolve the problem? I have RNA seq data and fastqc reported Adapter Content pass but kmer-content failure. ...
written 5 weeks ago by archanaverma4330
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convert sam into paf format
... I have to convert the aligned sam file to paf for miniasm. Can anyone suggest any tool? ...
genome assembly alignment snp sequencing written 6 weeks ago by archanaverma4330 • updated 21 days ago by rlorigro10
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
... EnhancedVolcano(res5, lab = res5$symbol, x = 'log2FoldChange', y = 'padj', selectLab = rownames(res5)[which(names(keyvals.shape) %in% c('adhesion', 'pluripotent', 'differentiation', 'others'))], x ...
written 6 months ago by archanaverma4330 • updated 6 months ago by Kevin Blighe69k
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
... Great tool! I am trying "Custom shape & colour over-ride" , . i have 4 cell types . can you tell me how to label genes names of different shapes ? ...
written 6 months ago by archanaverma4330

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