User: win

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win690
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690
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Posts by win

<prev • 187 results • page 1 of 19 • next >
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Known Indels and BED sites
... Hi all, i am conducting whole exome sequencing using GATK and I wanted the VCF for known indels and a BED file for exome analysis. Is there an known Indel file for hg38 and also a BED for the same. I am finding the InDel file for GrCh37 but I wanted to hg38. Any pointers appreciated a lot. Thank ...
wes written 4 days ago by win690
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Parse FASTQC data
... Hi all, I have a question regarding FASTQC . When we run FASTQC on FASTQ file it generates an HTML report. Is there any tool out there that can read FASTQC data, parse it and provide it in raw form. I need this so that I could use the values in an algorithm to determine if the data is of good qualit ...
ngs written 4 days ago by win690 • updated 4 days ago by James Ashmore2.3k
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VCF with SnpEff and gene name annotations
... hi all, i am looking for a well annotated VCF file, one that has gene names and SnpEff annotations. there are a few that i found online but they had only SnpEff annotations but no gene names. if someone could point me in the direction of such as VCF, I would really appreciate it. thanks in advance ...
vcf written 7 days ago by win690
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PICARD tools param database
... hi all. happy new year. in reference to PICARD tools found here https://broadinstitute.github.io/picard/command-line-overview.html i wanted to know if there is a database of picard tools database that contains list of each picard tool and all the parameters that go with it? Like an excel or maybe ...
picard written 16 days ago by win690 • updated 16 days ago by Raony Guimarães760
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Comment: C: Microbial genomics pipelines
... OK I WILL. Thanks for the reminder. ...
written 4 months ago by win690
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Comment: C: Microbial genomics pipelines
... Thanks that helps, i will review each one, but are the tools mentioned there the most commonly ones used in microbial genomics? ...
written 4 months ago by win690
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Microbial genomics pipelines
... hello, i have worked a lot in human genomics and wanted to delve into microbial genomics a bit. basically i was looking for pointers for analysis of microbial sequencing data? is it the same as human? are there any sites/ resources that discuss microbial genomics including the bioinformatics pipeli ...
ngs microbial genomics written 4 months ago by win690 • updated 4 months ago by h.mon10k
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Disease risk variants from 23andme
... hi all, i am integrating with 23andme APIs. I am aware that it is possible to download the entire chip manifest, i wanted to know if there was any information that states which variants are analyzed for a certain phenotype such as say Alzheimer disease? Thanks in advance. ...
variants written 9 months ago by win690
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Comment: C: Commonly used charts in NGS/ bioinformatics
... WouterDeCoster: Other people have answered the question legibly. I don't want to read any cookery stuff. What you consider is your lookout!! ...
written 14 months ago by win690
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Comment: C: Commonly used charts in NGS/ bioinformatics
... I know that Vijay, nonconstructive time waste comment of yours ...
written 14 months ago by win690

Latest awards to win

Popular Question 4 months ago, created a question with more than 1,000 views. For Human GRCh38 and dbSNP VCF and GATK
Popular Question 4 months ago, created a question with more than 1,000 views. For HG18 coordinates of rs#
Popular Question 4 months ago, created a question with more than 1,000 views. For Create A Tbi File From Vcf
Popular Question 4 months ago, created a question with more than 1,000 views. For genome coordinates for snps
Epic Question 4 months ago, created a question with more than 10,000 views. For Annotate A Vcf File
Popular Question 4 months ago, created a question with more than 1,000 views. For Sample Exome Fastq Files
Popular Question 9 months ago, created a question with more than 1,000 views. For Vcf Database Table Structure
Appreciated 9 months ago, created a post with more than 5 votes. For Samtools And Region List
Popular Question 9 months ago, created a question with more than 1,000 views. For Gff To Vcf
Popular Question 9 months ago, created a question with more than 1,000 views. For Human GRCh38 and dbSNP VCF and GATK
Popular Question 9 months ago, created a question with more than 1,000 views. For Sample Exome Fastq Files
Great Question 9 months ago, created a question with more than 5,000 views. For Sample Exome Fastq Files
Popular Question 9 months ago, created a question with more than 1,000 views. For Create A Tbi File From Vcf
Student 9 months ago, asked a question with at least 3 up-votes. For Vcf Database Table Structure
Popular Question 13 months ago, created a question with more than 1,000 views. For Compile Tabix Under Cygwin
Popular Question 13 months ago, created a question with more than 1,000 views. For Chromosomal Locus From Ucsc
Popular Question 13 months ago, created a question with more than 1,000 views. For How To Programatically Obtain More Information On A Gene By Using Its Gene Symbol
Popular Question 13 months ago, created a question with more than 1,000 views. For Create A Tbi File From Vcf
Popular Question 13 months ago, created a question with more than 1,000 views. For Gff To Vcf
Popular Question 13 months ago, created a question with more than 1,000 views. For Dbsnp In Vcf
Popular Question 13 months ago, created a question with more than 1,000 views. For Sample Exome Fastq Files
Popular Question 13 months ago, created a question with more than 1,000 views. For Vcf Database Table Structure
Epic Question 13 months ago, created a question with more than 10,000 views. For Samtools And Region List
Great Question 13 months ago, created a question with more than 5,000 views. For Annotate A Vcf File
Great Question 13 months ago, created a question with more than 5,000 views. For Sample Exome Fastq Files

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