User: Amos Bairoch
Amos Bairoch • 40
- Reputation:
- 40
- Status:
- New User
- Location:
- Switzerland, Geneva, Swiss Institute of Bioinformatics
- Website:
- https://www.sib.swiss/...
- Twitter:
- @cellosaurus
- Scholar ID:
- Google Scholar Page
- Last seen:
- 2 weeks, 5 days ago
- Joined:
- 12 months ago
- Email:
- a***********@gmail.com
Posts by Amos Bairoch
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... Cellosaurus release 34 is available on the ExPASy server: https://web.expasy.org/cellosaurus/
**1) Statistics**
118785 cell lines (88553 human, 20872 mouse, 2136 rat)
671 species represented
79419 synonyms
345031 cross-references to 89 ontologies, databases, catalogs, etc.
112586 references to 19 ...
written 19 days ago by
Amos Bairoch • 40
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... Cellosaurus release 33 is available on the ExPASy server: https://web.expasy.org/cellosaurus/
**1) Statistics**
- 117636 cell lines (87495 human, 20817 mouse, 2131 rat)
- 669 species represented
- 78709 synonyms
- 343275 cross-references to 89 ontologies, databases, catalogs, etc.
- 110953 re ...
written 3 months ago by
Amos Bairoch • 40
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... CLASTR is the name of the Cellosaurus STR search tool available at:
https://web.expasy.org/cellosaurus-str-search/
It now supports STR profile similarity searches for mouse and dog cell lines.
Compared with human (6680), there is currently very few mouse (51) and dog (36) cell lines with a STR pr ...
written 6 months ago by
Amos Bairoch • 40
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... Cellosaurus release 32 is available on the ExPASy server: https://web.expasy.org/cellosaurus/
**1) Statistics**
114697 cell lines (85532 human, 20061 mouse, 2127 rat)
631 species represented
75209 synonyms
339808 cross-references to 89 ontologies, databases, catalogs, etc.
108796 references to 18 ...
written 6 months ago by
Amos Bairoch • 40
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... Cellosaurus release 31 is available on the ExPASy server: https://web.expasy.org/cellosaurus/
**1) Statistics**
- 113576 cell lines (84952 human, 19726 mouse, 2080 rat)
- 625 species represented
- 74399 synonyms
- 337114 cross-references to 88 ontologies, databases, catalogs, etc.
- 106802 re ...
written 9 months ago by
Amos Bairoch • 40
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... Cellosaurus release 30 is available on the ExPASy server: https://web.expasy.org/cellosaurus/
**1) Statistics**
- 112983 cell lines (84432 human, 19675 mouse, 2075 rat)
- 625 species represented
- 73553 synonyms
- 331707 cross-references to 85 ontologies, databases, catalogs, etc.
- 104057 referen ...
written 10 months ago by
Amos Bairoch • 40
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... Thibault Robin, a PhD student in our group, has developed a very powerful STR similarity search tool that was made publicly available a few weeks ago:
https://web.expasy.org/cellosaurus-str-search/
With this tool you can search for similarities between your cell line samples and the human cell lin ...
written 11 months ago by
Amos Bairoch • 40
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Comment:
A: Clinical Data for CCLE Cell Lines
... Yes table S2 only contains the cell line names, description and Xref to the Cellosaurus. The genome ancestry values are not in these files. I got the file I am using to plug the info in the Cellosaurus from Julie Dutil directly. You should contact her. Alternatively you will be able to programatical ...
written 11 months ago by
Amos Bairoch • 40
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... If for the clinical information, you mean the cancer type than you can do this using the Cellosaurus. You can parse the XML version available at ftp://ftp.expasy.org/databases/cellosaurus and look for cell lines in CCLE which you can do be either taking all cell lines with:
Cancer Cell Line En ...
written 12 months ago by
Amos Bairoch • 40
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... And you can look up for your cell lines in the Cellosaurus, all those that are "problematic" are indicated and this includes all cell lines in the ICLAC register as well as other. The following FAQ explains this:
https://web.expasy.org/cgi-bin/cellosaurus/faq#Q17
Note that you can retrieve the lis ...
written 12 months ago by
Amos Bairoch • 40
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