User: malina

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malina0
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Posts by malina

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Answer: A: Is There A Free Alternative To Ingenuity Pathway Analysis?
... I was looking for a tool to identify upstream regulators from a gene set these days and found this! iRegulon Paper https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003731 Download for free from here: http://iregulon.aertslab.org/download.html#download It works with ...
written 10 months ago by malina0 • updated 10 months ago by genomax78k
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Comment: C: About Package ‘clValid’
... Hi genomax, I hope not. I was working with clValid and sota clustering on Friday. Found this answer very helpful but expanded on it, so it can be directly used to get not only the row.numbers of genes in clusters but also the gene names. ...
written 10 months ago by malina0
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Answer: A: About Package ‘clValid’
... # Some expansion on the code above #assign the lists of row numbers for different clusters to a variable gene.numbers gene.numbers = as.matrix(split(1:length(sotaCl[["clust"]]), sotaCl[["clust"]])) #Unlist the row nambers for individual clusters ( for example cluster 4) ...
written 10 months ago by malina0 • updated 10 months ago by genomax78k

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