User: chernouhov sergey

Reputation:
40
Status:
New User
Location:
Russian Federation
Last seen:
9 hours ago
Joined:
7 months, 1 week ago
Email:
c*********@rambler.ru

https://github.com/chernouhov/CBioInfCpp-0-

chernouhov@rambler.ru

Although my job is far from bioinformatics, this field is very interesting for me too.

So I'll be glad to communicate with others who interested in bioinformatics.

Contest 2019: Bioinformatics Contest 2019 Qualification Round: http://mon.stepik.org/2019-qualification.html (71) Bioinformatics Contest 2019 Final Round: http://mon.stepik.org/2019-finals (196)

Also I am interested in academical curriculum in this field (resident/ non-resident/ online, but preferably in Russian).

Another my interest is to participate in a real bioinformatics project.

https://www.coursera.org/account/accomplishments/certificate/LXFKXN7S7PME

 

 

 

 

Posts by chernouhov sergey

<prev • 21 results • page 1 of 3 • next >
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Answer: A: Software to identify microsatellites, minisatellites and satellites in a plant g
... Hi. If you have a minute look here (for not doubling the post): https://www.biostars.org/p/109512/#408328 I'll be glad for feedback ...
written 9 hours ago by chernouhov sergey40
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Answer: A: Identify short repeats in DNA sequence?
... Hi. If you like C++ you may use the function TandemRepeatsFinding from my lib CBioInfCpp.h (https://github.com/chernouhov/CBioInfCpp-0-) Here is its result for the given file of a chromosome string (Note: very big .txt file): https://drive.google.com/file/d/1U_0Avzncl72ST4GlTko7aivEHa7HTdjy/view ...
written 10 hours ago by chernouhov sergey40
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Comment: C: Two questions about the bio-software
... I prefer to know (and to modify if needed) how a lool works too. If you have a mimute - see my lib for C++ CBioInfCpp - maybe smth may be useful or you have an idea what function may be added. https://github.com/chernouhov/CBioInfCpp-0- ...
written 14 days ago by chernouhov sergey40
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... 03.11.2019 - Group of functions Num updated. - Function ScoreStringMatrix that counts score (i.e. total number of mismatches) upon vector a of strings s added. - Function GPPM that generates a position probability matrix (PPM) added. Note that pseudocounts may be used (the formula (Ns+z)/(N+2*z) i ...
written 14 days ago by chernouhov sergey40
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... 19.10.2019: - Added group of functions AdjVectorToAdjMegaMap, AdjMegaMapToAdjVector to convert Adjacency vector to/ from Adjacency mega-map (i.e. extended version of Adjacency map to contain graphs having different multiply edges). - Updated Group of function GraphCout and GraphFout to deal with m ...
written 29 days ago by chernouhov sergey40
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... 31.08.2019 update: - Function GenRandomUWGraph that generates a random unweighted graph (as its "Adjacency vector") has been added. - Group of function intended to find collection of vertices for each strongly connected component of directed graph and to find collection of vertices for each connect ...
written 8 weeks ago by chernouhov sergey40
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... 09.08.2019 update: - Group of function "NBPaths" (for finding maximal non-branching paths in a graph, both weighted or no, directed or no) has been added. - Functions ConsStringQ1 and ConsStringQ2 for building consensus string upon a given collection of strings according to their quality has been a ...
written 3 months ago by chernouhov sergey40
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... 14.07.2019 update: - Function CIGAR1 has been added. - Group of function "GraphCout" and "GraphFout" has been updated (so nowadays one may "cout/ fout" a graph that is set by both Adjacency vector and Adjacency map to screen/ to file line by line: one edge in one line). - Function EditDistA as an e ...
written 4 months ago by chernouhov sergey40
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... 23/06/2019 update: - Group of function "FindIn" has been updated. - Functions PairVectorCout, PairVectorFout has been updated. - Group of function "GraphCout" and "GraphFout" has been added. So nowadays one may "cout/ fout" a graph that is set by Adjacency vector to screen/ to file line by line: on ...
written 4 months ago by chernouhov sergey40
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Comment: A: Resources to learn htslib and C/C++
... By the way, why not to deveop C++ lib in community: https://github.com/chernouhov/CBioInfCpp-0- ...
written 5 months ago by chernouhov sergey40

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