User: chernouhov sergey

Reputation:
50
Status:
Trusted
Location:
Russian Federation
Last seen:
3 days, 1 hour ago
Joined:
1 year, 9 months ago
Email:
c*********@rambler.ru

https://github.com/chernouhov/CBioInfCpp-0-

chernouhov@rambler.ru

Although my job is far from bioinformatics, this field is very interesting for me too.

So I'll be glad to communicate with others who interested in bioinformatics.

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Another my interest is to participate in a real bioinformatics project.

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Contest 2019: Bioinformatics Contest 2019 Qualification Round: http://mon.stepik.org/2019-qualification.html (71) Bioinformatics Contest 2019 Final Round: http://mon.stepik.org/2019-finals (196)

Also I am interested in academical curriculum in this field (resident/ non-resident/ online, but preferably in Russian).

https://www.coursera.org/account/accomplishments/certificate/LXFKXN7S7PME

 

 

 

 

 

Posts by chernouhov sergey

<prev • 37 results • page 1 of 4 • next >
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... 12.01.2021 - Function SubGraphsInscribedM - i.e. an experimental version of the function SubGraphsInscribed - has been added. SubGraphsInscribedM can find subgraphs in a given A that are isomorphic to a given template graph B too, but new is that vertices of these graphs may have marks. It may be ...
written 11 days ago by chernouhov sergey50
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Answer: A: On (sub)graph isomorphism
... Nowadays algo is elaborated to find all (not only inscribed) isomorfic subgraphs in a given graph. In particular, it founds - for a directed graph B (15 vertices-20edged) - 4536 isomprphic subgraphs in directed graph A(250-350), ~ 3 sec, - for a directed graph B (25-35) - 82546 isomprphic subgra ...
written 7 weeks ago by chernouhov sergey50
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... 05.12.2020 - The extended experimental version of the function SubGraphsInscribed have been added. This extention/ modifacation is done by working with all edges of the input graphs instead of working with non-branching paths. If InscribedOnly == false the function finds all (not only inscribed) su ...
written 7 weeks ago by chernouhov sergey50
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... 10.07.2020 - Function SuffixTreeMake (to make a suffix tree upon a string) and CoutSuffixTree & FoutSuffixTree (to out suffix tree to screen or to file) has been added. Suffix Tree will be contained in the vector of integers Tree, every edge as quartet of integers: number of the start-vertex of ...
written 6 months ago by chernouhov sergey50
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Comment: A: On (sub)graph isomorphism
... Every function has its description too. Also if someone have interesting task or dataset you are welcome. ...
written 9 months ago by chernouhov sergey50
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Comment: C: On (sub)graph isomorphism
... Thanks, it is in plan. But you see, CBioInfCpp is a free open lib, you may see code (function SubGraphsInscribed in particular) and its readme and pdf (Rus and Eng) here just now: https://github.com/chernouhov/CBioInfCpp-0-. Also if you have some interesting tasks or datasets we may try them via it ...
written 9 months ago by chernouhov sergey50
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... some on isomorphic (sub)graph finding (examples and time estimating): https://www.biostars.org/p/434792/ ...
written 9 months ago by chernouhov sergey50
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On (sub)graph isomorphism
... Hi all. What tool and method do you use fo problems like - to chech if 2 graphs are isomorphic? - to find in a certain graph A its subgraphs that are isomorphic to given graph B? As for me, I tryed to solve this problem by myself and suggested maximal non-branching paths approach to solve it (pre ...
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... 22.04.2020 - Modified function GenerateAlphabet for a single string. - Added group of function MakeSubgraphSetOfVertices to generate a subgraphs of a given graph (set by Adjacency vector) and a set/ unordered_set of vertices to be chosen. ...
written 9 months ago by chernouhov sergey50
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Answer: A: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
... 29.03.2020 - Added functions MedianString and GenerateAlphabet. ...
written 10 months ago by chernouhov sergey50

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Popular Question 10 months ago, created a question with more than 1,000 views. For CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
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