User: omg what am I doing...

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Posts by omg what am I doing...

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Answer: A: Merge VCFs with overlapping samples
... You need bcftools concat, I used the command below and got the result you described. bcftools concat -a filtered_indels_annotated.vcf.gz filtered_snps_annotated.vcf.gz -Ov -o filtered_BC_merged.vcf Some useful info here on the -a option: https://samtools.github.io/bcftools/bcftools.html#norm ...
written 10 days ago by omg what am I doing...10

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