User: Biological information research group of Harbin medical university daqing campus
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Posts by Biological information research group of Harbin medical university daqing campus
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... You can use the BDGDIFF function of MacS2 to do this.
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written 4 months ago by
Biological information research group of Harbin medical university daqing campus • 10
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4 months ago by
zx8754 ♦ 10.0k
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... You can go to GENCODE and download an annotated file of a human gene and intersect his gene with the gene in the annotated file using the R function intersect () or go to ensemble Biomart and convert the ID here is the website of [Biomart][1]
[1]: https://www.oebiotech.com/Article/ensemblbio.htm ...
written 15 months ago by
Biological information research group of Harbin medical university daqing campus • 10
• updated
15 months ago by
ATpoint ♦ 46k
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... I have another idea that I hope can help you.Sequence alignment was made with fa file and probe sequence of reference genome sequence and mrna reference sequence respectively, and then python code was written to extract location information from alignment result XML or other format files.The probe s ...
written 17 months ago by
Biological information research group of Harbin medical university daqing campus • 10
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Comment:
C: Tools for scRNAseq
... Seurat,Linnorm,Dimm-SC，It can all be done, and I'm glad it helps ...
written 17 months ago by
Biological information research group of Harbin medical university daqing campus • 10
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... This can answer from the perspective of alternative splicing, for a specific gene, follow specific probe design in the gene, and because of the different regions of the same gene the use efficiency of alternative splicing sites in the same cell condition is different, will eventually lead to differe ...
written 18 months ago by
Biological information research group of Harbin medical university daqing campus • 10
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... I have a personal thought, if it's not correct then I'm sorry.
If you know which is the mouse and which is the human in the data, you can write shell split directly. If you don't know, you can compare it first and then split it after comparing it twice. ...
written 21 months ago by
Biological information research group of Harbin medical university daqing campus • 10
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