User: my6

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my60
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Posts by my6

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Comment: C: How to select sample from Seurat object?
... yes, I made a column in which now I have this information. Also, I know from which to which cell in a row is it but I am not sure how can I select all the data for these cells as it is not a simple table but a Seurat object ...
written 15 days ago by my60
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How to select sample from Seurat object?
... Hi, I am analyzing 10x single-cell data from GEO with the help of the Seurat package. This data set contains 4 different samples which I can identify by the 18th letter in the cells barcode ("1", "2", "3"? "4"), how can I select only one of them (for example "1") for analysis? Thank you :) ...
single-cell rna seq rna-seq written 15 days ago by my60
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... Is there is any formula to do do it automatically? I mean select all possible combinations. It is not a problem if you are interested in 2 genes but become much more complicated if you have 10 genes and want to correlate all possible combinations of them with survival. ...
written 21 months ago by my60
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Comment: A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... Why do we need to emove genes whose expression is == 0 in more than 50% of the samples at the beginning? ...
written 21 months ago by my60

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