User: manubiomed20

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manubiomed2010
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1 year, 3 months ago
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Posts by manubiomed20

<prev • 38 results • page 1 of 4 • next >
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Comment: C: How to convert multiple bam format files into fastas?
... I didn't understand what you meant by " Use um for loop ou (mais elaborado) GNU parallel para vários arquivos'. I am really starting with bioinformatics and still have difficulty. ...
written 11 months ago by manubiomed2010
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Comment: C: How to convert multiple bam format files into fastas?
... I believe that reaching consensus would be very useful. how can I do this ? I am really starting with bioinformatics and still have difficulty. ...
written 11 months ago by manubiomed2010
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How to convert multiple bam format files into fastas?
... I have several bam format files that I need to convert each one to fasta files. I haven't found any commands I can use to convert multiple bam to fasta at one time. It is possible? ...
assembly written 11 months ago by manubiomed2010
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Error: Duplicate ID '26:42' generated by --set-missing-var-ids.
... I used the command below to update variant information, but something went wrong, it seems that my vcf has 2 variants in the same position. :~/Documentos/PLink_Manu$ plink --file dis-MT --set-missing-var-ids @:# --recode --out dis-MT PLINK v1.90b6.10 64-bit (1 ...
plink written 11 months ago by manubiomed2010
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Comment: C: How generate files plink?
... thank you. I changed the name of the directory and it worked. ...
written 11 months ago by manubiomed2010
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Comment: C: How generate files plink?
... This is just the name of the subfolder. ...
written 11 months ago by manubiomed2010
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Comment: C: How generate files plink?
... take the space and still error. ...
written 11 months ago by manubiomed2010
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Comment: C: How generate files plink?
... plink --vcf /home/lucasmalzoni/Documents/MT-20190821T182828Z-001/MT/VCF and Plink files/4513_MT_Filtered_Samples.vcf.gz --recode --out ALS-MT PLINK v1.90b6.10 64-bit (17 Jun 2019) www.cog-genomics.org/plink/1.9/ (C) 2005-2019 Shaun Purcell, Christopher Chang GNU General P ...
written 11 months ago by manubiomed2010
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How generate files plink?
... I am trying to create plink (.map and .ped) files and I am getting the message: plink: unknown option "--" I used the following command plink -- vcf /home/lucasmalzoni/Documents/MT-20190821T182828Z-001/MT/Mutect2/4513.vcf.gz --recode --out ALS-MT ...
software error tool written 11 months ago by manubiomed2010
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Comment: C: How to find LB from fastq to create a read group?
... the sample is 1000 browser genomes. and I couldn't find. ...
written 11 months ago by manubiomed2010

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