User: NS

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NS0
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Posts by NS

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Comment: C: Extracting Ancestral allele from INFO column of vcf file
... Thanks for your help ! Is there also a way to keep only bi-allelic SNPs in this output using bcf tools ? ...
written 29 days ago by NS0
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Extracting Ancestral allele from INFO column of vcf file
... Hi From my vcf file, I need to generate a text file with the following headers (shown just an example): CHROM POS ID REF ALT AA 1 886817 rs11174805 C G C 1 886817 rs111111111 C T . 1 886817 rs11144444 A T ...
vcf ancestral allele snp shell linux written 29 days ago by NS0
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Comment: A: Reference and ALT allele list for all SNPs
... Thanks ...
written 4 weeks ago by NS0
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Reference and ALT allele list for all SNPs
... Where can I find the list of REFERENCE and ALT alleles for all SNPs (hg19/GrCH37)? Can someone please share a link where I can download the list. Thanks ...
snp written 4 weeks ago by NS0

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