User: A. Domingues

gravatar for A. Domingues
A. Domingues1.2k
Reputation:
1,250
Status:
Trusted
Location:
Mainz, Germany
Website:
http://adomingues.gith...
Twitter:
keyboardpipette
Last seen:
an hour ago
Joined:
4 years, 9 months ago
Email:
a***********@gmail.com

Biologist doing research in gene expression regulation with a background in neurobiology and entering the world of bioinformatics.

Posts by A. Domingues

<prev • 187 results • page 1 of 19 • next >
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Comment: C: StackExchange/Area51 bioinformatics is back
... Yes, and I suffered from that at the beginning, but I never had a post removed from SE. I got some slaps for poor questions and had to do some edits but otherwise fine. In the process I learned how to learn. This also means that I spend a lot of time looking for an answer before I post. Of course YM ...
written 3 days ago by A. Domingues1.2k
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Comment: C: StackExchange/Area51 bioinformatics is back
... Downvotes on SE also reduce the reputation points of the voter, so they can't exactly be handed out like candy. ...
written 4 days ago by A. Domingues1.2k
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Comment: C: StackExchange/Area51 bioinformatics is back
... > I hate SE as a medium, if you ask a simple question you get downvoted to oblivion and at best you get a condescending comment about your question without even an answer. It's a horrible teaching platform. I disagree with this. I have used both Biostars **and** SE while learning and both helped ...
written 4 days ago by A. Domingues1.2k
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Comment: C: Graph visualization with igraph in R
... I can confirm that the tutorial is indeed excellent. I have playing around with it recently. ...
written 13 days ago by A. Domingues1.2k
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Comment: C: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using
... I see that you are based in the UK. Any plans on doing a similar course(s) in Central Europe? ...
written 13 days ago by A. Domingues1.2k
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Comment: C: Bioinformatics courses, workshops or training
... I don't see a problem about those courses not being free. It is true that there are some free courses, but I disagree that many quality _presential_ courses are free. People may also choose to pay for a course which is closer to home, instead to flying to a "free" course. If the courses listed are n ...
written 15 days ago by A. Domingues1.2k
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Comment: C: How to do differential expression of circular RNAs?
... Oh yes, I had forgotten about Zhang *et al*. However, you do have a different setting (better in my opinion), in that you have replicates, and I am not sure a Wilcoxon rank-sum test is the most appropriate for your data. I will let a statistician help you with that one. The other 2 references, as ...
written 28 days ago by A. Domingues1.2k
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Comment: C: How to do differential expression of circular RNAs?
... Also, it is bad form in a Q&A site such as Biostar, to submit a comment/request as "answer". ...
written 28 days ago by A. Domingues1.2k
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Comment: C: How to do differential expression of circular RNAs?
... If I remember the circRNA literature correctly, the RPMs are used (and useful) to determine expression levels of circRNAs vs linear. It is a very specific case also because of the nature of circRNAs, the only reads used tend to be those of the splice junctions unique (or not) to the circRNAs. To be ...
written 28 days ago by A. Domingues1.2k
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Comment: C: How to find Overlapping coordinates on their 3' or 5'?
... Tabs but these were converted to spaces, so I double checked, and also with "," as a separator, and the problems is `awk`: ```shell join -t $'\t' -1 1 -2 1 <(sed 's/\t/_/' a.bed | sort -t $'\t' -k1,1 ) <(sed 's/\t/_/' a.bed | sort -t $'\t' -k1,1 ) chr1_10 25 feat2 . + 25 feat2 . + chr1_100 ...
written 4 weeks ago by A. Domingues1.2k

Latest awards to A. Domingues

Commentator 3 days ago, created a comment with at least 3 up-votes. For C: how to parallelize single function in R?
Commentator 4 days ago, created a comment with at least 3 up-votes. For C: how to parallelize single function in R?
Scholar 4 weeks ago, created an answer that has been accepted. For A: How to had CDS feature with cufflinks (cuffmerge) using custom GTF?
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Bioinformatics Training On Next-Generation Sequencing Data
Appreciated 4 weeks ago, created a post with more than 5 votes. For A: MutSigCV output and coMut plots
Commentator 5 weeks ago, created a comment with at least 3 up-votes. For C: how to parallelize single function in R?
Appreciated 3 months ago, created a post with more than 5 votes. For A: MutSigCV output and coMut plots
Student 3 months ago, asked a question with at least 3 up-votes. For MutSigCV output and coMut plots
Popular Question 4 months ago, created a question with more than 1,000 views. For problems with MAF for MutSigCV (vcf2maf)
Guru 5 months ago, received more than 100 upvotes.
Popular Question 5 months ago, created a question with more than 1,000 views. For problems with MAF for MutSigCV (vcf2maf)
Popular Question 6 months ago, created a question with more than 1,000 views. For problems with MAF for MutSigCV (vcf2maf)
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Bioinformatics Training On Next-Generation Sequencing Data
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Bioinformatics Training On Next-Generation Sequencing Data
Great Question 7 months ago, created a question with more than 5,000 views. For Heatmap Of Read Coverage Around Tsss
Popular Question 8 months ago, created a question with more than 1,000 views. For problems with MAF for MutSigCV (vcf2maf)
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Bioinformatics Training On Next-Generation Sequencing Data
Scholar 11 months ago, created an answer that has been accepted. For A: How to had CDS feature with cufflinks (cuffmerge) using custom GTF?
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Bioinformatics Training On Next-Generation Sequencing Data
Scholar 11 months ago, created an answer that has been accepted. For A: How to had CDS feature with cufflinks (cuffmerge) using custom GTF?
Popular Question 11 months ago, created a question with more than 1,000 views. For How to had CDS feature with cufflinks (cuffmerge) using custom GTF?
Scholar 11 months ago, created an answer that has been accepted. For A: How to had CDS feature with cufflinks (cuffmerge) using custom GTF?
Scholar 13 months ago, created an answer that has been accepted. For A: How to had CDS feature with cufflinks (cuffmerge) using custom GTF?
Popular Question 13 months ago, created a question with more than 1,000 views. For problems with MAF for MutSigCV (vcf2maf)
Popular Question 14 months ago, created a question with more than 1,000 views. For problems with MAF for MutSigCV (vcf2maf)

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