User: A. Domingues

gravatar for A. Domingues
A. Domingues2.1k
Reputation:
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Location:
Mainz, Germany
Website:
http://adomingues.gith...
Twitter:
keyboardpipette
Last seen:
13 hours ago
Joined:
6 years, 11 months ago
Email:
a***********@gmail.com

Biologist doing research in gene expression regulation with a background in neurobiology and entering the world of bioinformatics.

Posts by A. Domingues

<prev • 227 results • page 1 of 23 • next >
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Comment: C: Middle author, but not first author projects. How would you approach this?
... This. It's a huge change in contractual terms. Had it been suggested to me I would have flat out refused it. If insisted upon I would start applying to other positions. ...
written 10 weeks ago by A. Domingues2.1k
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Comment: C: Middle author, but not first author projects. How would you approach this?
... > I was considering a staff scientist career, but I wouldn’t like to do it with postdoctoral contracts. And rightly so. Since your background is mathematics, you might need to be on a postdoctoral contract for a period of time to show that you can hack it in a biology setting (communication can ...
written 10 weeks ago by A. Domingues2.1k
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Comment: C: Middle author, but not first author projects. How would you approach this?
... I second this. Our lab values computational work so that works for me, but I am sure not all groups do. This needs to be seriously discussed. There are more jobs out there. ...
written 10 weeks ago by A. Domingues2.1k
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Answer: A: Middle author, but not first author projects. How would you approach this?
... Fellow "pet bioinformatician" here. I am also an a Postdoc but that is just the title of the position. In practice, and it was the agreement from the beginning, I am more of a staff bioinformatician which handles all of the (NGS/genomics) data analysis needs of the lab. I could have started my own i ...
written 11 weeks ago by A. Domingues2.1k
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Comment: C: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
... Alicia Oshlack in particular has been doing a lot of good stuff under the radar: bpipe, diffvar, missMethyl,and clustree. ...
written 11 weeks ago by A. Domingues2.1k
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Answer: A: HTSeq errors in the command line
... You are directing your output to a directory. Try this: ```bash htseq-count -f bam -q -m union -s yes -t exon -i gene_id ~/RNAseq/mapping/star/Treated_1.bam Treated_2.bam Untreated_1.bam Untreated_2.bam ~/RNAseq/annotation/Homo_sapiens.GRCh37.75.gtf > /home/RNAseq/htseq-count/countReads/all.cou ...
written 3 months ago by A. Domingues2.1k
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Answer: A: fastq file on the basis of read length
... I believe you could also use [seqtk][1] to do this: `seqtk seq -L 25 yourseqs.fastq.gz > cleanseqs.fastq.gz ` [1]: https://github.com/lh3/seqtk/ ...
written 3 months ago by A. Domingues2.1k
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Answer: A: Are small RNAs included in a typical Illumina RNA seq dataset?
... **Short answer** Probably not. **Long answer** You will need to check with whomever prepared the libraries, but judging from the description alone > I have a paired-end, stranded RNA dataset sequenced with Illumina TruSeq I would say it is highly unlikely that there are any small RNAs there ...
written 4 months ago by A. Domingues2.1k
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Comment: C: Test Whether The Variance In A Group Is Lower Than In Another
... Hi Giovanni, how did you end up solving this? I ran into a very similar [problem](https://www.biostars.org/p/360444/). ...
written 4 months ago by A. Domingues2.1k
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How to test gene expression variability - expression differences independent of genotype
... We have a mutant (gene KO) that displays two different phenotypes identified by the presence or absence of expression of a reporter. Since this mutation is in gene that is part of an endogenous RNAi pathway, and the strains have the same genotype, we hypothesized that the report status is not due to ...
gene expression deseq2 rna-seq written 5 months ago by A. Domingues2.1k

Latest awards to A. Domingues

Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Bioinformatics Training On Next-Generation Sequencing Data
Commentator 10 weeks ago, created a comment with at least 3 up-votes. For C: how to parallelize single function in R?
Commentator 10 weeks ago, created a comment with at least 3 up-votes. For C: how to parallelize single function in R?
Appreciated 11 weeks ago, created a post with more than 5 votes. For A: MutSigCV output and coMut plots
Good Answer 11 weeks ago, created an answer that was upvoted at least 5 times. For A: MutSigCV output and coMut plots
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Bioinformatics Training On Next-Generation Sequencing Data
Good Answer 3 months ago, created an answer that was upvoted at least 5 times. For A: MutSigCV output and coMut plots
Scholar 6 months ago, created an answer that has been accepted. For A: How to had CDS feature with cufflinks (cuffmerge) using custom GTF?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Bioinformatics Training On Next-Generation Sequencing Data
Appreciated 6 months ago, created a post with more than 5 votes. For A: MutSigCV output and coMut plots
Scholar 7 months ago, created an answer that has been accepted. For A: How to had CDS feature with cufflinks (cuffmerge) using custom GTF?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Bioinformatics Training On Next-Generation Sequencing Data
Great Question 7 months ago, created a question with more than 5,000 views. For Issue with naming convention in bedtools
Popular Question 8 months ago, created a question with more than 1,000 views. For rRNA quantification: which is the best way?
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Bioinformatics Training On Next-Generation Sequencing Data
Great Question 9 months ago, created a question with more than 5,000 views. For problems with MAF for MutSigCV (vcf2maf)
Great Question 9 months ago, created a question with more than 5,000 views. For Heatmap Of Read Coverage Around Tsss
Good Answer 10 months ago, created an answer that was upvoted at least 5 times. For A: MutSigCV output and coMut plots
Popular Question 13 months ago, created a question with more than 1,000 views. For rRNA quantification: which is the best way?
Popular Question 14 months ago, created a question with more than 1,000 views. For How to identify consecutive (adjacent) genomic intervals
Popular Question 15 months ago, created a question with more than 1,000 views. For How to identify consecutive (adjacent) genomic intervals
Student 16 months ago, asked a question with at least 3 up-votes. For Issue with naming convention in bedtools
Popular Question 16 months ago, created a question with more than 1,000 views. For How to identify consecutive (adjacent) genomic intervals
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Bioinformatics Training On Next-Generation Sequencing Data
Popular Question 2.0 years ago, created a question with more than 1,000 views. For How to had CDS feature with cufflinks (cuffmerge) using custom GTF?

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