User: A. Domingues
A. Domingues • 2.1k
- Reputation:
- 2,090
- Status:
- Trusted
- Location:
- Dresden, Germany
- Website:
- http://adomingues.gith...
- Twitter:
- keyboardpipette
- Last seen:
- 14 hours ago
- Joined:
- 7 years, 3 months ago
- Email:
- a***********@gmail.com
Biologist doing research in gene expression regulation with a background in neurobiology and entering the world of bioinformatics.
Posts by A. Domingues
<prev
• 231 results •
page 1 of 24 •
next >
0
votes
0
answers
107
views
0
answers
Comment:
C: How to use RIPSeeker?
... No modification at all, I simply did a IP / input comparison and it worked well - at least that is what my colleagues which did the experimental validation told me. ...
written 10 days ago by
A. Domingues • 2.1k
0
votes
0
answers
107
views
0
answers
Comment:
C: How to use RIPSeeker?
... Not an answer but unless you really need to use RIPseeker, I would advise to look for alternatives. As far as I can tell development as been stagnating fro a long time now, with the last commit in github being 2 years ago, and pull requests and issues going unanswered from around that time. I also r ...
written 12 days ago by
A. Domingues • 2.1k
1
vote
2
answers
201
views
2
answers
... No idea. I suggest asking the developers in github. They have been quite responsive whenever I had similar questions. ...
written 3 months ago by
A. Domingues • 2.1k
1
vote
2
answers
201
views
2
answers
... I have used [SalmonTE](https://github.com/LiuzLab/SalmonTE) in the past and had good experiences. It uses `salmon` the background but then aggregates the counts per element, family and class. The results tables are also ready to use with `DESeq2` ...
written 3 months ago by
A. Domingues • 2.1k
3
votes
5
answers
1.7k
views
5
answers
... This. It's a huge change in contractual terms. Had it been suggested to me I would have flat out refused it. If insisted upon I would start applying to other positions. ...
written 6 months ago by
A. Domingues • 2.1k
2
votes
5
answers
1.7k
views
5
answers
... > I was considering a staff scientist career, but I wouldn’t like to do it with postdoctoral contracts.
And rightly so. Since your background is mathematics, you might need to be on a postdoctoral contract for a period of time to show that you can hack it in a biology setting (communication can ...
written 6 months ago by
A. Domingues • 2.1k
3
votes
5
answers
1.7k
views
5
answers
... I second this. Our lab values computational work so that works for me, but I am sure not all groups do. This needs to be seriously discussed. There are more jobs out there. ...
written 6 months ago by
A. Domingues • 2.1k
11
votes
5
answers
1.7k
views
5
answers
... Fellow "pet bioinformatician" here. I am also an a Postdoc but that is just the title of the position. In practice, and it was the agreement from the beginning, I am more of a staff bioinformatician which handles all of the (NGS/genomics) data analysis needs of the lab. I could have started my own i ...
written 6 months ago by
A. Domingues • 2.1k
2
votes
13
answers
2.4k
views
13
answers
... Alicia Oshlack in particular has been doing a lot of good stuff under the radar: bpipe, diffvar, missMethyl,and clustree. ...
written 6 months ago by
A. Domingues • 2.1k
0
votes
1
answer
389
views
1
answers
... You are directing your output to a directory. Try this:
```bash
htseq-count -f bam -q -m union -s yes -t exon -i gene_id ~/RNAseq/mapping/star/Treated_1.bam Treated_2.bam Untreated_1.bam Untreated_2.bam ~/RNAseq/annotation/Homo_sapiens.GRCh37.75.gtf > /home/RNAseq/htseq-count/countReads/all.cou ...
written 7 months ago by
A. Domingues • 2.1k
Latest awards to A. Domingues
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For Project organization: make code public and keep notes private
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Project organization: make code public and keep notes private
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: Bioinformatics Training On Next-Generation Sequencing Data
Commentator
6 months ago,
created a comment with at least 3 up-votes.
For C: how to parallelize single function in R?
Commentator
6 months ago,
created a comment with at least 3 up-votes.
For C: how to parallelize single function in R?
Good Answer
6 months ago,
created an answer that was upvoted at least 5 times.
For A: MutSigCV output and coMut plots
Appreciated
6 months ago,
created a post with more than 5 votes.
For A: MutSigCV output and coMut plots
Teacher
6 months ago,
created an answer with at least 3 up-votes.
For A: Bioinformatics Training On Next-Generation Sequencing Data
Good Answer
6 months ago,
created an answer that was upvoted at least 5 times.
For A: MutSigCV output and coMut plots
Scholar
10 months ago,
created an answer that has been accepted.
For A: How to had CDS feature with cufflinks (cuffmerge) using custom GTF?
Teacher
10 months ago,
created an answer with at least 3 up-votes.
For A: Bioinformatics Training On Next-Generation Sequencing Data
Appreciated
10 months ago,
created a post with more than 5 votes.
For A: MutSigCV output and coMut plots
Teacher
11 months ago,
created an answer with at least 3 up-votes.
For A: Bioinformatics Training On Next-Generation Sequencing Data
Scholar
11 months ago,
created an answer that has been accepted.
For A: How to had CDS feature with cufflinks (cuffmerge) using custom GTF?
Great Question
11 months ago,
created a question with more than 5,000 views.
For Issue with naming convention in bedtools
Popular Question
12 months ago,
created a question with more than 1,000 views.
For rRNA quantification: which is the best way?
Teacher
12 months ago,
created an answer with at least 3 up-votes.
For A: Bioinformatics Training On Next-Generation Sequencing Data
Great Question
12 months ago,
created a question with more than 5,000 views.
For problems with MAF for MutSigCV (vcf2maf)
Great Question
13 months ago,
created a question with more than 5,000 views.
For Heatmap Of Read Coverage Around Tsss
Good Answer
14 months ago,
created an answer that was upvoted at least 5 times.
For A: MutSigCV output and coMut plots
Popular Question
17 months ago,
created a question with more than 1,000 views.
For rRNA quantification: which is the best way?
Popular Question
17 months ago,
created a question with more than 1,000 views.
For How to identify consecutive (adjacent) genomic intervals
Popular Question
19 months ago,
created a question with more than 1,000 views.
For How to identify consecutive (adjacent) genomic intervals
Student
20 months ago,
asked a question with at least 3 up-votes.
For Issue with naming convention in bedtools
Popular Question
20 months ago,
created a question with more than 1,000 views.
For How to identify consecutive (adjacent) genomic intervals
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1109 users visited in the last hour