User: Malka

gravatar for Malka
Malka20
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20
Status:
New User
Location:
The Hebrew University, Jerusalem, Israel
Last seen:
11 months, 4 weeks ago
Joined:
1 year ago
Email:
i***********@gmail.com

Posts by Malka

<prev • 24 results • page 1 of 3 • next >
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Comment: C: Download GTF/GFF annotation data for NT database, not by organism (for STAR alig
... Thanks! As I said, I'd be happy to elaborate privately. I looked for a way to send you a private message on this site, but didn't find such an option. And quite honestly, I am not yet completely certain myself of exactly where this would lead... ...
written 12 months ago by Malka20
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Comment: C: Download GTF/GFF annotation data for NT database, not by organism (for STAR alig
... That might follow later on. My plans for initial analysis are different. I'd be happy to elaborate further in private if you wish. I am not keen on publicising research ideas before they are done... I hope you understand. ...
written 12 months ago by Malka20
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Comment: C: Download GTF/GFF annotation data for NT database, not by organism (for STAR alig
... That's great! Thanks for the useful link. I wonder if there's a way to get annotation files too... And I would need to find a solution for the issue of bacteria which don't have a reference for the species, so that not all strains should be aligned to... Perhaps I will suggest it there. I would li ...
written 12 months ago by Malka20
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Comment: C: Download GTF/GFF annotation data for NT database, not by organism (for STAR alig
... Thanks. I need bacterial genomes too... Is there a similar file for that? And how about archaea? Thank you. ...
written 12 months ago by Malka20
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Comment: C: Download GTF/GFF annotation data for NT database, not by organism (for STAR alig
... I sure will! I have yet to decide exactly how to proceed. The comments on this post have added valuable perspectives to my thoughts and plans. For now, I will not be carrying out mass-scale STAR alignments, partly because I do not yet have access to a server with enough RAM and disk storage (I tho ...
written 12 months ago by Malka20
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Comment: C: Download GTF/GFF annotation data for NT database, not by organism (for STAR alig
... Thanks for your important points! I will certainly look into it. Currently, I am thinking of focusing more on bacteria in samples, although they don't affect the actual genome. Thanks! ...
written 12 months ago by Malka20
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Comment: C: Download GTF/GFF annotation data for NT database, not by organism (for STAR alig
... Thanks! (I wrote an elaborate reply to this comment and to your comment below from several weeks ago, but couldn't post it because I don't yet have enough votes on the site...) Regarding the data, I haven't found a way to filter SRA accession codes by tissue type on NCBI's SRA website (nor at DDBJ ...
written 12 months ago by Malka20
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Comment: C: What is the difference between SRR, DRR, ERR ?
... You are right. I mistakenly wrote 'publication' instead of 'project'. I corrected it. (Couldn't reply yesterday because I don't yet have enough points...) ...
written 12 months ago by Malka20
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... Thanks for your fast replies ...
written 12 months ago by Malka20
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Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
... Hi, I am trying to get my college to buy this book and courses for bioinformatics students. I'd like to know please: 1. The Bioinformatics Data Analysis course mentioned above is not mentioned on the site when buying the books. Is it still included with every purchase? 2. The student pack doesn't ...
written 12 months ago by Malka20 • updated 12 months ago by RamRS27k

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Supporter 12 months ago, voted at least 25 times.

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