User: erikt

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erikt0
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Posts by erikt

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Comment: C: Adding IDT CNV Backbone Spike-in to Small Targeted Panel for CNV Calling With CN
... Thanks for your reply, Markus. I'll merge the two bed files in that case. My biggest concern is that a large difference in coverage between the two sets of targets would be a problem for the pipeline. Of course no capture has uniform coverage, and the pool of normals coverage profiles will exhibit t ...
written 13 days ago by erikt0
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Adding IDT CNV Backbone Spike-in to Small Targeted Panel for CNV Calling With CNVkit
... Hello! I am designing an IDT capture panel consisting of 31 genes for sequencing some FFPE tumor samples. In addition to calling small variants I would also like to use CNVkit to call copy number aberrations for the genes in the panel. Since this is a small panel with only ~ 1300 probes it seems li ...
targeted cnvkit panel cnv written 14 days ago by erikt0 • updated 14 days ago by markus.riester400

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