User: vladimiralan

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Posts by vladimiralan

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Comment: C: Is it possible to extract the 'intronic' sequences from a trancriptome obtained
... Thank you so much for your response! and yeah, it seems like those strategies you linked are the way to go. You see, I am just an undergraduate student starting to learn R and the Bioconductor library, and just recently started using the biomaRt package. When I found you cannot directly get the int ...
written 12 days ago by vladimiralan0
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Comment: C: Is it possible to extract the 'intronic' sequences from a trancriptome obtained
... Hey! thanks for replying! Sorry about the title... What do you mean by a 'basic file'? I wrote my script so I can download all the transcripts, exons and UTR sequences of an organism in a multi fasta file (well, actually 3 files, one for each biotype), but I mean, I obtain the data from ensembl by ...
written 12 days ago by vladimiralan0
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Is it possible to extract the 'intronic' sequences from a trancriptome obtained from Biomart using the Biostrings package (R)? I also have the exon and UTR sequences available.
... Using the biomaRt R package I was able to obtain the transcriptome of an organism as well as all its exons and UTR sequences. Now, using the Biostring package I managed to process these objects so that I can write them as a fasta file; however, I also need to get the intronic sequences and there is ...
genome R sequence rna-seq sequencing written 13 days ago by vladimiralan0

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