User: demolidd77

gravatar for demolidd77
demolidd7740
Reputation:
40
Status:
New User
Location:
Last seen:
9 hours ago
Joined:
7 months ago
Email:
d*********@gmail.com

Posts by demolidd77

<prev • 11 results • page 1 of 2 • next >
2
votes
1
answer
164
views
1
answer
Wheter adapter and other technical sequences can occur in any location within reads ?
... HI, there is a sentence "Although adapter and other technical sequences can potentially occur in any location within reads" in the [trimmomatic manual][1] , as I know , adapter sequences(adapter reverse complementary sequences) should only occur in the 3'end of every read , so why this ma ...
genome trimmomatic fastq alignment sequencing written 3 months ago by demolidd7740 • updated 8 weeks ago by Biostar ♦♦ 20
0
votes
2
answers
3.0k
views
2
answers
Comment: A: BQSR: when it is applicable?
... Nice disscussion ! Check this [page][1] , [1]: https://software.broadinstitute.org/gatk/documentation/tooldocs/current/org_broadinstitute_hellbender_tools_walkers_bqsr_BaseRecalibrator.php ...
written 4 months ago by demolidd7740 • updated 4 months ago by ATpoint26k
0
votes
2
answers
14k
views
2
answers
Answer: A: Looking For A Way To Count Total Length Of Regions Of Bed File
... ## For a BED file , you can cacalculate its total size to use `awk -F'\t' 'BEGIN{SUM=0}{ SUM+=$3-$2 }END{print SUM}' file.bed` . It works correctly . ...
written 4 months ago by demolidd7740
0
votes
0
answers
145
views
0
answers
Comment: C: ask for a help to download soap-hla
... Thanks! what tools do you use to do HLA type inference ? ...
written 4 months ago by demolidd7740
0
votes
0
answers
145
views
0
answers
ask for a help to download soap-hla
... HI, I wanna download this tool ,soap-hla, from OmicsTools web , but my account is not a premium account , so could someone give me an alternative way to resolve this problem . will appreciate for your help ! BTW , The official web of SOAP-HLA is not available now . the tool link from Omics ...
soap-hla bioinfomatics hla immune written 4 months ago by demolidd7740 • updated 4 months ago by genomax75k
2
votes
0
answers
174
views
0
answers
where can I download the gold standard datasets with validated and accurate tumor purity and pioldy values?
... HI, I wanna adjust and test a software's performance in calling tumor purity and pioldy for target sequencing data , so where can I download such these samples data ,including known tumor purity and pioldy values ? thanks . ...
tumor purity pioldy datasets written 5 months ago by demolidd7740 • updated 5 months ago by Shicheng Guo7.8k
1
vote
1
answer
1.7k
views
1
answers
Comment: C: how do I get a vcf containing germline snps from dbSNP?
... Very useful ! Thanks !! ...
written 5 months ago by demolidd7740
1
vote
1
answer
187
views
1
answer
what's the best sequencing read length based NGS for HLA typing ?
... Hi, I got a question , how to choose the best sequencing strategy for a better downstream HLA typing tool analysis,like hlascan,optitype,etc . how long the read length should be ? Thanks ...
antigen ngs hla typing hla written 5 months ago by demolidd7740 • updated 5 months ago by Charles Warden7.5k
0
votes
1
answer
3.5k
views
1
answers
Comment: C: Fasta Sequence For Each Hla Alleles
... HI,geek_y, You can write a script to deal with [hla.dat][1] ,just to extract any HLA allele exons that you need . [1]: ftp://ftp.ebi.ac.uk/pub/databases/ipd/imgt/hla/hla.dat ...
written 6 months ago by demolidd7740
0
votes
1
answer
3.5k
views
1
answers
Comment: C: Fasta Sequence For Each Hla Alleles
... This is useful !!! others who wana extract HLA exomes information , I suggest you can use hla.dat to build your database. ...
written 6 months ago by demolidd7740

Latest awards to demolidd77

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1711 users visited in the last hour