User: silverspanch

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silverspanch10
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Posts by silverspanch

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Comment: C: CWL join two dimensional file array output
... Thanks Tom, this worked great! I havent used the ExpressionTool class before but this is exactly what I was looking for. ...
written 6 months ago by silverspanch10
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CWL limit number of job instances created through scatter
... Is there any way to limit the number of job instances created when scattering a workflow? Right now I have a highly parallelizable workflow that spans into more then 1200 jobs when running in parallel, which is way to many for a single server to handle at once, and I end up getting a bunch of MAX_TH ...
queue scatter cwl resource management written 6 months ago by silverspanch10 • updated 6 months ago by Michael R. Crusoe1.8k
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Comment: C: CWL join two dimensional file array output
... Thanks, I didnt know about this functionality. ...
written 6 months ago by silverspanch10
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CWL join two dimensional file array output
... I have a CWL workflow that scatters a list of variables over a nested workflow which returns a file array. The output is then an array of file arrays, but it needs to be flattened for the next step. How do I gather the inputs from one step, and join the multidimensional file array into a single flat ...
workflow cwl scatter written 7 months ago by silverspanch10 • updated 6 months ago by Tom520

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