User: mrxcm3

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mrxcm340
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5 days ago
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7 years, 10 months ago
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m*****@hotmail.com

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Posts by mrxcm3

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Calling Exon Skipping Events from RNA-Seq
... thanks lieven.sterck. I will take a look for sure. ...
written 5 days ago by mrxcm340
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Calling Exon Skipping Events from RNA-Seq
... I have RNA-Seq data from tumour samples and references, and I have had success calling gene fusion events. However, although I have tried a range of fusion detection tools, none of them are able to detect within-gene ('exon skipping') events such as MET ex14 skipping or EGFR vIII. I have also tried ...
fusion star rna-seq written 5 days ago by mrxcm340 • updated 3 days ago by gianluca.dellavedova50
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Comment: C: Update 'ID' column in VCF file using BCFtools annotate
... This worked. It was my chromosome names that were the issue. I thought the bed file has to have 'chr1' format in order to be tabix indexed. ...
written 3.4 years ago by mrxcm340
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Comment: C: Update 'ID' column in VCF file using BCFtools annotate
... Thanks, I will probably use this in the future. ...
written 3.4 years ago by mrxcm340
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Update 'ID' column in VCF file using BCFtools annotate
... I have a very large VCF file where the 'ID' column is a unique ID comprising of 'chr:bp'. I would like to update the 'ID' column to dbSNP IDs. I have downloaded a bed file [chr, from, to, rsid], which I have sorted and tabix indexed. The bedfile is for hg19, which is correct for my data, chromosom ...
bcftools vcftools written 3.4 years ago by mrxcm340 • updated 3.4 years ago by William4.6k
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Answer: A: Haplotype Block Database
... Perhaps try the SNAP Proxy Search tool (http://www.broadinstitute.org/mpg/snap/ldsearch.php)? ...
written 7.9 years ago by mrxcm340

Latest awards to mrxcm3

Great Question 12 months ago, created a question with more than 5,000 views. For Update 'ID' column in VCF file using BCFtools annotate
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Update 'ID' column in VCF file using BCFtools annotate

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